QTL Peak Table

We performed permutations to estimate the alpha = 0.05 significance threshold of LOD = 7.7698322. Using this threshold, there are QTL peaks, listed in the table below.

Phenotype Chr Pos LOD CI low CI high
survival 1 154.10289 8.283179 153.71611 156.64735
lung_vegf 2 93.54690 7.853143 92.14710 94.28775
lung_s100a8 3 90.74194 18.557481 90.52078 91.97561
serum_cxcl5 5 77.13883 9.683969 75.91675 91.73410
lung_cxcl1 15 25.75102 7.907527 19.16443 25.83097
necr_ratio 17 37.22030 7.921965 35.19377 41.96493

Survival: Chr 1

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
mtb_burden 1 154.5151 7.417580 154.0780 155.5343
lung_cxcl1 1 154.8180 6.905196 149.8180 159.8180
lung_mmp8 1 158.2314 6.108413 153.2314 163.2314
survival 1 154.1029 8.283179 153.7161 156.6474

The survival QTL on Chr 1 is colocated with three other QTL for lung: Mtb Burden, Cxcl1, and Mmp8.

Below is the associtation mapping plot for Surrvival.

There are 126 unique genes in the QTL interval. We measured expression for 119 of these genes.

Plot a histogram of the correlations.

The correlations are all very high. This makes me wonder whether the genes are changing due to disease or the passing of time. Plot the gene with the highest correlation vs. the phenotype.

We can also select genes based on a T-test between mice euthanized early and those that survived to the end of the study.

Plot a histogram of the adjusted T-test p-values.

There are still a lot of genes with low p-values. Plot the one with the lowest p-value (6.795409810^{-7}).

This looks reasonable.

Produce a list of genes with mean expression and t-test p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr survival
100503355 ENSMUSG00000066797 Zfp648 zinc finger protein 648 missense_variant 10 chr1 154.2012 154.2057 4.657745 0.0422888
100503355 ENSMUSG00000066797 Zfp648 zinc finger protein 648 synonymous_variant 9 chr1 154.2012 154.2057 4.657745 0.0422888
100503355 ENSMUSG00000066797 Zfp648 zinc finger protein 648 5_prime_UTR_variant 4 chr1 154.2012 154.2057 4.657745 0.0422888
102466257 ENSMUSG00000099227 Mir8114 microRNA 8114 downstream_gene_variant 4 chr1 153.8999 153.9000 NA NA
102466257 ENSMUSG00000099227 Mir8114 microRNA 8114 mature_miRNA_variant 1 chr1 153.8999 153.9000 NA NA
102466257 ENSMUSG00000099227 Mir8114 microRNA 8114 mature_miRNA_variant 1 chr1 153.8999 153.9000 NA NA
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 intron_variant 64 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 missense_variant 8 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 3_prime_UTR_variant 23 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 non_coding_transcript_variant 87 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 synonymous_variant 17 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 upstream_gene_variant 15 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 non_coding_transcript_exon_variant 87 chr1 155.7782 155.8129 7.205347 0.0000127
104009 ENSMUSG00000033684 Qsox1 quiescin Q6 sulfhydryl oxidase 1 downstream_gene_variant 37 chr1 155.7782 155.8129 7.205347 0.0000127
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) missense_variant 5 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 5_prime_UTR_variant 2 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) 3_prime_UTR_variant 66 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) downstream_gene_variant 78 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) upstream_gene_variant 2 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) intron_variant 4 chr1 156.5588 156.6496 5.449245 1.0000000
11352 ENSMUSG00000026596 Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) synonymous_variant 16 chr1 156.5588 156.6496 5.449245 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit synonymous_variant 47 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit downstream_gene_variant 30 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit 3_prime_UTR_variant 156 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit splice_region_variant 1 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit non_coding_transcript_exon_variant 71 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit intron_variant 54 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit upstream_gene_variant 4 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit 5_prime_UTR_variant 4 chr1 154.3907 154.8845 4.054498 1.0000000
12290 ENSMUSG00000004110 Cacna1e calcium channel, voltage-dependent, R type, alpha 1E subunit non_coding_transcript_variant 73 chr1 154.3907 154.8845 4.054498 1.0000000
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) intron_variant 5 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) non_coding_transcript_variant 7 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) synonymous_variant 10 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) 5_prime_UTR_variant 1 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) upstream_gene_variant 1 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) 5_prime_UTR_variant 1 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) downstream_gene_variant 22 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) non_coding_transcript_exon_variant 7 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) 3_prime_UTR_variant 13 chr1 153.8999 153.9097 8.551207 0.1386641
14645 ENSMUSG00000026473 Glul glutamate-ammonia ligase (glutamine synthetase) upstream_gene_variant 5 chr1 153.8999 153.9097 8.551207 0.1386641
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related upstream_gene_variant 23 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related splice_region_variant 4 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related downstream_gene_variant 48 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related missense_variant 11 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related 3_prime_UTR_variant 50 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related non_coding_transcript_variant 81 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related synonymous_variant 12 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related non_coding_transcript_exon_variant 81 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related intron_variant 22 chr1 155.1273 155.1468 7.197759 1.0000000
15064 ENSMUSG00000026471 Mr1 major histocompatibility complex, class I-related NMD_transcript_variant 84 chr1 155.1273 155.1468 7.197759 1.0000000
15939 ENSMUSG00000056708 Ier5 immediate early response 5 3_prime_UTR_variant 7 chr1 155.0964 155.0996 6.089479 0.0027359
15939 ENSMUSG00000056708 Ier5 immediate early response 5 missense_variant 1 chr1 155.0964 155.0996 6.089479 0.0027359
15939 ENSMUSG00000056708 Ier5 immediate early response 5 5_prime_UTR_variant 2 chr1 155.0964 155.0996 6.089479 0.0027359
16872 ENSMUSG00000026468 Lhx4 LIM homeobox protein 4 synonymous_variant 5 chr1 155.6980 155.7517 3.996348 0.0021133
16872 ENSMUSG00000026468 Lhx4 LIM homeobox protein 4 5_prime_UTR_variant 5 chr1 155.6980 155.7517 3.996348 0.0021133
16872 ENSMUSG00000026468 Lhx4 LIM homeobox protein 4 3_prime_UTR_variant 48 chr1 155.6980 155.7517 3.996348 0.0021133
16872 ENSMUSG00000026468 Lhx4 LIM homeobox protein 4 downstream_gene_variant 30 chr1 155.6980 155.7517 3.996348 0.0021133
16872 ENSMUSG00000026468 Lhx4 LIM homeobox protein 4 intron_variant 2 chr1 155.6980 155.7517 3.996348 0.0021133
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin missense_variant 6 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin intron_variant 3 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin downstream_gene_variant 26 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin 3_prime_UTR_variant 30 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin downstream_gene_variant 6 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin 5_prime_UTR_variant 2 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin upstream_gene_variant 6 chr1 156.3107 156.3280 3.823199 1.0000000
170484 ENSMUSG00000026602 Nphs2 nephrosis 2, podocin synonymous_variant 10 chr1 156.3107 156.3280 3.823199 1.0000000
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 3_prime_UTR_variant 26 chr1 153.7403 153.7455 5.689600 0.0067758
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 missense_variant 1 chr1 153.7403 153.7455 5.689600 0.0067758
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 synonymous_variant 2 chr1 153.7403 153.7455 5.689600 0.0067758
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 5_prime_UTR_variant 1 chr1 153.7403 153.7455 5.689600 0.0067758
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 downstream_gene_variant 7 chr1 153.7403 153.7455 5.689600 0.0067758
19734 ENSMUSG00000026475 Rgs16 regulator of G-protein signaling 16 upstream_gene_variant 1 chr1 153.7403 153.7455 5.689600 0.0067758
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 splice_region_variant 1 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 3_prime_UTR_variant 58 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 downstream_gene_variant 47 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 synonymous_variant 11 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 non_coding_transcript_exon_variant 72 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 non_coding_transcript_variant 72 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 missense_variant 8 chr1 155.2757 155.4174 7.413397 1.0000000
19775 ENSMUSG00000026469 Xpr1 xenotropic and polytropic retrovirus receptor 1 intron_variant 57 chr1 155.2757 155.4174 7.413397 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 downstream_gene_variant 4 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 3_prime_UTR_variant 154 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 non_coding_transcript_variant 73 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 synonymous_variant 23 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 intron_variant 28 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 non_coding_transcript_exon_variant 73 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 missense_variant 5 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 downstream_gene_variant 162 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 5_prime_UTR_variant 6 chr1 156.4245 156.4743 8.877399 1.0000000
20652 ENSMUSG00000026600 Soat1 sterol O-acyltransferase 1 upstream_gene_variant 6 chr1 156.4245 156.4743 8.877399 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 missense_variant 31 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 upstream_gene_variant 48 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 3_prime_UTR_variant 18 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 downstream_gene_variant 5 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 intron_variant 13 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 downstream_gene_variant 64 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 splice_region_variant 1 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 synonymous_variant 30 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 5_prime_UTR_variant 6 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 non_coding_transcript_exon_variant 67 chr1 155.2125 155.2444 3.081962 1.0000000
207792 ENSMUSG00000033722 BC034090 cDNA sequence BC034090 non_coding_transcript_variant 72 chr1 155.2125 155.2444 3.081962 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 intron_variant 4 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 non_coding_transcript_exon_variant 16 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 NMD_transcript_variant 14 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 synonymous_variant 14 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 splice_region_variant 3 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 synonymous_variant 4 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 missense_variant 1 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 5_prime_UTR_variant 5 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 intron_variant 13 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 3_prime_UTR_variant 29 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 upstream_gene_variant 20 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 5_prime_UTR_variant 12 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 NMD_transcript_variant 45 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 missense_variant 11 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 upstream_gene_variant 23 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 non_coding_transcript_variant 7 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 non_coding_transcript_variant 19 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 non_coding_transcript_exon_variant 3 chr1 156.0046 156.0365 7.121517 1.0000000
208263 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 downstream_gene_variant 36 chr1 156.0046 156.0365 7.121517 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 missense_variant 10 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 intron_variant 83 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 3_prime_UTR_variant 8 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 downstream_gene_variant 14 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 non_coding_transcript_exon_variant 85 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 upstream_gene_variant 13 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 non_coding_transcript_variant 87 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 synonymous_variant 15 chr1 156.2553 156.3037 3.470233 1.0000000
214575 ENSMUSG00000060985 Tdrd5 tudor domain containing 5 5_prime_UTR_variant 3 chr1 156.2553 156.3037 3.470233 1.0000000
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) 3_prime_UTR_variant 19 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) 5_prime_UTR_variant 13 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) intron_variant 49 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) non_coding_transcript_exon_variant 66 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) non_coding_transcript_variant 66 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) coding_sequence_variant 6 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) missense_variant 44 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) synonymous_variant 14 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) initiator_codon_variant 4 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) downstream_gene_variant 30 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) incomplete_terminal_codon_variant 6 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) upstream_gene_variant 18 chr1 153.7494 153.7642 6.353801 0.0000007
24014 ENSMUSG00000066800 Rnasel ribonuclease L (2’, 5’-oligoisoadenylate synthetase-dependent) upstream_gene_variant 51 chr1 153.7494 153.7642 6.353801 0.0000007
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 upstream_gene_variant 11 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 intron_variant 11 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 5_prime_UTR_variant 1 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 non_coding_transcript_variant 9 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 non_coding_transcript_exon_variant 8 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 3_prime_UTR_variant 8 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 missense_variant 2 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 NMD_transcript_variant 16 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 downstream_gene_variant 10 chr1 153.7794 153.8441 2.757036 0.0119833
240816 ENSMUSG00000042641 Rgsl1 regulator of G-protein signaling like 1 synonymous_variant 5 chr1 153.7794 153.8441 2.757036 0.0119833
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 downstream_gene_variant 13 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 intron_variant 16 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 non_coding_transcript_exon_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 non_coding_transcript_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 intron_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 intron_variant 38 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 synonymous_variant 6 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 non_coding_transcript_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 non_coding_transcript_exon_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 intron_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 splice_region_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 5_prime_UTR_variant 2 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 upstream_gene_variant 4 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 missense_variant 6 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 3_prime_UTR_variant 21 chr1 153.8495 153.8512 2.796701 0.0816218
240817 ENSMUSG00000045968 Teddm2 transmembrane epididymal family member 2 splice_region_variant 1 chr1 153.8495 153.8512 2.796701 0.0816218
240819 ENSMUSG00000047053 Teddm1a transmembrane epididymal protein 1A missense_variant 3 chr1 153.8917 153.8931 3.454632 0.0591840
240819 ENSMUSG00000047053 Teddm1a transmembrane epididymal protein 1A synonymous_variant 3 chr1 153.8917 153.8931 3.454632 0.0591840
240819 ENSMUSG00000047053 Teddm1a transmembrane epididymal protein 1A 3_prime_UTR_variant 10 chr1 153.8917 153.8931 3.454632 0.0591840
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 missense_variant 11 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 non_coding_transcript_exon_variant 17 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 3_prime_UTR_variant 78 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 intron_variant 14 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 5_prime_UTR_variant 28 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 downstream_gene_variant 106 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 5_prime_UTR_variant 18 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 non_coding_transcript_variant 17 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 intron_variant 38 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 synonymous_variant 14 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 upstream_gene_variant 23 chr1 156.0354 156.0689 6.736217 1.0000000
240832 ENSMUSG00000050565 Tor1aip2 torsin A interacting protein 2 upstream_gene_variant 33 chr1 156.0354 156.0689 6.736217 1.0000000
329271 ENSMUSG00000100334 C230024C17Rik RIKEN cDNA C230024C17 gene non_coding_transcript_variant 46 chr1 153.7212 153.7378 3.184680 0.0116277
329271 ENSMUSG00000100334 C230024C17Rik RIKEN cDNA C230024C17 gene non_coding_transcript_exon_variant 46 chr1 153.7212 153.7378 3.184680 0.0116277
329271 ENSMUSG00000100334 C230024C17Rik RIKEN cDNA C230024C17 gene upstream_gene_variant 1 chr1 153.7212 153.7378 3.184680 0.0116277
329274 ENSMUSG00000015484 Fam163a family with sequence similarity 163, member A 3_prime_UTR_variant 48 chr1 156.0760 156.2050 3.732818 0.0001058
329274 ENSMUSG00000015484 Fam163a family with sequence similarity 163, member A missense_variant 1 chr1 156.0760 156.2050 3.732818 0.0001058
329274 ENSMUSG00000015484 Fam163a family with sequence similarity 163, member A 5_prime_UTR_variant 2 chr1 156.0760 156.2050 3.732818 0.0001058
329274 ENSMUSG00000015484 Fam163a family with sequence similarity 163, member A synonymous_variant 4 chr1 156.0760 156.2050 3.732818 0.0001058
433365 ENSMUSG00000043282 Teddm1b transmembrane epididymal protein 1B 5_prime_UTR_variant 2 chr1 153.8743 153.8769 3.481265 0.9518334
433365 ENSMUSG00000043282 Teddm1b transmembrane epididymal protein 1B missense_variant 7 chr1 153.8743 153.8769 3.481265 0.9518334
433365 ENSMUSG00000043282 Teddm1b transmembrane epididymal protein 1B 3_prime_UTR_variant 22 chr1 153.8743 153.8769 3.481265 0.9518334
433365 ENSMUSG00000043282 Teddm1b transmembrane epididymal protein 1B synonymous_variant 7 chr1 153.8743 153.8769 3.481265 0.9518334
433367 ENSMUSG00000073535 Gm5532 predicted gene 5532 non_coding_transcript_exon_variant 36 chr1 155.5202 155.5271 3.559297 1.0000000
433367 ENSMUSG00000073535 Gm5532 predicted gene 5532 intron_variant 4 chr1 155.5202 155.5271 3.559297 1.0000000
433367 ENSMUSG00000073535 Gm5532 predicted gene 5532 splice_region_variant 1 chr1 155.5202 155.5271 3.559297 1.0000000
433367 ENSMUSG00000073535 Gm5532 predicted gene 5532 downstream_gene_variant 30 chr1 155.5202 155.5271 3.559297 1.0000000
433367 ENSMUSG00000073535 Gm5532 predicted gene 5532 non_coding_transcript_variant 36 chr1 155.5202 155.5271 3.559297 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 non_coding_transcript_variant 17 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 missense_variant 4 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 upstream_gene_variant 9 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 3_prime_UTR_variant 25 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 synonymous_variant 1 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 NMD_transcript_variant 14 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 non_coding_transcript_exon_variant 15 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 downstream_gene_variant 32 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 intron_variant 31 chr1 155.1587 155.2083 6.736441 1.0000000
58244 ENSMUSG00000026470 Stx6 syntaxin 6 downstream_gene_variant 12 chr1 155.1587 155.2083 6.736441 1.0000000
671336 ENSMUSG00000096950 Gm9530 predicted gene 9530 non_coding_transcript_variant 24 chr1 155.0634 155.0833 3.215301 0.4819791
671336 ENSMUSG00000096950 Gm9530 predicted gene 9530 non_coding_transcript_exon_variant 24 chr1 155.0634 155.0833 3.215301 0.4819791
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 3_prime_UTR_variant 45 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 non_coding_transcript_variant 18 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 missense_variant 4 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 non_coding_transcript_exon_variant 16 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 downstream_gene_variant 43 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 5_prime_UTR_variant 15 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 NMD_transcript_variant 12 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 intron_variant 21 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 synonymous_variant 10 chr1 155.5581 155.6913 5.204439 1.0000000
72482 ENSMUSG00000033701 Acbd6 acyl-Coenzyme A binding domain containing 6 upstream_gene_variant 23 chr1 155.5581 155.6913 5.204439 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 synonymous_variant 41 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 3_prime_UTR_variant 26 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 upstream_gene_variant 17 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 non_coding_transcript_exon_variant 14 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 downstream_gene_variant 45 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 missense_variant 17 chr1 155.8450 155.9733 7.147313 1.0000000
74081 ENSMUSG00000033671 Cep350 centrosomal protein 350 non_coding_transcript_variant 14 chr1 155.8450 155.9733 7.147313 1.0000000
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene non_coding_transcript_exon_variant 5 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene upstream_gene_variant 1 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene intron_variant 1 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene upstream_gene_variant 2 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene intron_variant 2 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene non_coding_transcript_variant 2 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene non_coding_transcript_variant 5 chr1 154.2557 154.2704 NA NA
75233 ENSMUSG00000100221 4930532M18Rik RIKEN cDNA 4930532M18 gene downstream_gene_variant 2 chr1 154.2557 154.2704 NA NA
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 downstream_gene_variant 4 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 intron_variant 40 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 intron_variant 34 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 downstream_gene_variant 16 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 upstream_gene_variant 10 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 3_prime_UTR_variant 11 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 splice_region_variant 5 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 5_prime_UTR_variant 4 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 upstream_gene_variant 34 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 non_coding_transcript_variant 50 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 synonymous_variant 12 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 non_coding_transcript_exon_variant 50 chr1 156.3235 156.4212 3.158642 0.6025583
77352 ENSMUSG00000026601 Axdnd1 axonemal dynein light chain domain containing 1 missense_variant 14 chr1 156.3235 156.4212 3.158642 0.6025583
78112 ENSMUSG00000099933 4930452N14Rik RIKEN cDNA 4930452N14 gene non_coding_transcript_exon_variant 8 chr1 154.2415 154.2569 4.234028 0.0001918
78112 ENSMUSG00000099933 4930452N14Rik RIKEN cDNA 4930452N14 gene non_coding_transcript_variant 1 chr1 154.2415 154.2569 4.234028 0.0001918
78112 ENSMUSG00000099933 4930452N14Rik RIKEN cDNA 4930452N14 gene upstream_gene_variant 1 chr1 154.2415 154.2569 4.234028 0.0001918
78112 ENSMUSG00000099933 4930452N14Rik RIKEN cDNA 4930452N14 gene intron_variant 1 chr1 154.2415 154.2569 4.234028 0.0001918
78112 ENSMUSG00000099933 4930452N14Rik RIKEN cDNA 4930452N14 gene non_coding_transcript_variant 8 chr1 154.2415 154.2569 4.234028 0.0001918

Lung Vegf: Chr 2

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
lung_vegf 2 93.5469 7.853143 92.1471 94.28775

The lung Vegf QTL on Chr 2 is not colocated with any other QTL.

Below is the association mapping plot for lung Vegf.

There are 33 unique genes in the QTL interval. We measured expression for 28 of these genes.

Plot a histogram of the correlations.

The correlations are all distributed more as I would expect. Plot the gene with the highest correlation vs. the phenotype, colored by DO generation.

Produce a list of genes with mean expression and correlation p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr bonf.p.value
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 non_coding_transcript_exon_variant 51 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 upstream_gene_variant 21 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 intron_variant 14 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 downstream_gene_variant 28 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 non_coding_transcript_variant 51 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 intron_variant 2 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 non_coding_transcript_variant 2 chr2 93.45282 93.46987 2.201581 1
100038525 ENSMUSG00000075025 Gm10804 predicted gene 10804 upstream_gene_variant 4 chr2 93.45282 93.46987 2.201581 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 5_prime_UTR_variant 4 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 non_coding_transcript_exon_variant 57 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 non_coding_transcript_variant 57 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 downstream_gene_variant 80 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 upstream_gene_variant 3 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 3_prime_UTR_variant 54 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 intron_variant 88 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 missense_variant 12 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 synonymous_variant 31 chr2 92.97202 93.04617 4.668000 1
100042784 ENSMUSG00000075028 Prdm11 PR domain containing 11 intron_variant 89 chr2 92.97202 93.04617 4.668000 1
100316756 ENSMUSG00000088639 Mir1955 microRNA 1955 upstream_gene_variant 2 chr2 92.19198 92.19207 2.490862 1
102465605 ENSMUSG00000099238 Mir7001 microRNA 7001 downstream_gene_variant 40 chr2 93.42193 93.42201 NA NA
102465605 ENSMUSG00000099238 Mir7001 microRNA 7001 non_coding_transcript_exon_variant 1 chr2 93.42193 93.42201 NA NA
102465605 ENSMUSG00000099238 Mir7001 microRNA 7001 non_coding_transcript_variant 1 chr2 93.42193 93.42201 NA NA
102465605 ENSMUSG00000099238 Mir7001 microRNA 7001 downstream_gene_variant 1 chr2 93.42193 93.42201 NA NA
102465704 ENSMUSG00000098406 Mir7222 microRNA 7222 non_coding_transcript_exon_variant 1 chr2 92.59460 92.59468 NA NA
102465704 ENSMUSG00000098406 Mir7222 microRNA 7222 non_coding_transcript_variant 1 chr2 92.59460 92.59468 NA NA
102466783 ENSMUSG00000099093 Mir7000 microRNA 7000 upstream_gene_variant 15 chr2 92.38738 92.38745 NA NA
102466783 ENSMUSG00000099093 Mir7000 microRNA 7000 downstream_gene_variant 17 chr2 92.38738 92.38745 NA NA
102466783 ENSMUSG00000099093 Mir7000 microRNA 7000 downstream_gene_variant 4 chr2 92.38738 92.38745 NA NA
102466783 ENSMUSG00000099093 Mir7000 microRNA 7000 mature_miRNA_variant 1 chr2 92.38738 92.38745 NA NA
102466819 ENSMUSG00000099223 Mir7221 microRNA 7221 downstream_gene_variant 1 chr2 92.59221 92.59228 NA NA
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 synonymous_variant 11 chr2 93.64238 93.68134 4.336364 1
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 intron_variant 7 chr2 93.64238 93.68134 4.336364 1
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 missense_variant 6 chr2 93.64238 93.68134 4.336364 1
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 3_prime_UTR_variant 89 chr2 93.64238 93.68134 4.336364 1
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 intron_variant 22 chr2 93.64238 93.68134 4.336364 1
11695 ENSMUSG00000040310 Alx4 aristaless-like homeobox 4 splice_region_variant 1 chr2 93.64238 93.68134 4.336364 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen non_coding_transcript_variant 48 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen splice_region_variant 4 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen intron_variant 26 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen missense_variant 2 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen 3_prime_UTR_variant 33 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen downstream_gene_variant 48 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen non_coding_transcript_exon_variant 30 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen upstream_gene_variant 1 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen upstream_gene_variant 29 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen upstream_gene_variant 5 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen intron_variant 1 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen 5_prime_UTR_variant 6 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen non_coding_transcript_variant 15 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen synonymous_variant 6 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen downstream_gene_variant 7 chr2 93.41911 93.46314 7.880465 1
12521 ENSMUSG00000027215 Cd82 CD82 antigen intron_variant 15 chr2 93.41911 93.46314 7.880465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) splice_region_variant 1 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) non_coding_transcript_exon_variant 5 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) downstream_gene_variant 29 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) intron_variant 50 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) synonymous_variant 9 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) non_coding_transcript_exon_variant 35 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) 3_prime_UTR_variant 28 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) intron_variant 25 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) downstream_gene_variant 1 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) non_coding_transcript_variant 8 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) splice_donor_variant 1 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) non_coding_transcript_variant 35 chr2 92.40365 92.43404 5.414465 1
12953 ENSMUSG00000068742 Cry2 cryptochrome 2 (photolyase-like) downstream_gene_variant 11 chr2 92.40365 92.43404 5.414465 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 intron_variant 96 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 synonymous_variant 24 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 upstream_gene_variant 13 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 5_prime_UTR_variant 16 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 non_coding_transcript_variant 81 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 3_prime_UTR_variant 34 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 missense_variant 9 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 non_coding_transcript_exon_variant 70 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 splice_region_variant 2 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 downstream_gene_variant 21 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 intron_variant 56 chr2 93.66103 93.82257 6.503873 1
14043 ENSMUSG00000027198 Ext2 exostosin glycosyltransferase 2 NMD_transcript_variant 81 chr2 93.66103 93.82257 6.503873 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 non_coding_transcript_variant 2 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 non_coding_transcript_exon_variant 10 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 synonymous_variant 4 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 downstream_gene_variant 1 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 5_prime_UTR_variant 5 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 upstream_gene_variant 21 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 non_coding_transcript_exon_variant 2 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 downstream_gene_variant 12 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 downstream_gene_variant 4 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 non_coding_transcript_variant 13 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 upstream_gene_variant 7 chr2 92.37468 92.38122 5.611072 1
18633 ENSMUSG00000027222 Pex16 peroxisomal biogenesis factor 16 intron_variant 10 chr2 92.37468 92.38122 5.611072 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 downstream_gene_variant 4 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 intron_variant 4 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 intron_variant 1 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 5_prime_UTR_variant 2 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 downstream_gene_variant 7 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 upstream_gene_variant 13 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 missense_variant 2 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 3_prime_UTR_variant 10 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 non_coding_transcript_exon_variant 15 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 non_coding_transcript_variant 15 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 downstream_gene_variant 1 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 intron_variant 13 chr2 92.38368 92.40126 4.658783 1
19099 ENSMUSG00000027223 Mapk8ip1 mitogen-activated protein kinase 8 interacting protein 1 synonymous_variant 8 chr2 92.38368 92.40126 4.658783 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A missense_variant 5 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A intron_variant 7 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A non_coding_transcript_exon_variant 7 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A downstream_gene_variant 90 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A synonymous_variant 12 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A non_coding_transcript_variant 7 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A downstream_gene_variant 60 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A 3_prime_UTR_variant 45 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A upstream_gene_variant 5 chr2 92.09312 92.36467 6.417169 1
192285 ENSMUSG00000058318 Phf21a PHD finger protein 21A 5_prime_UTR_variant 2 chr2 92.09312 92.36467 6.417169 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 upstream_gene_variant 71 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 5_prime_UTR_variant 2 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 downstream_gene_variant 92 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 5_prime_UTR_variant 2 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 upstream_gene_variant 13 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 3_prime_UTR_variant 55 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 synonymous_variant 33 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 NMD_transcript_variant 109 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 non_coding_transcript_exon_variant 109 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 non_coding_transcript_variant 109 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 downstream_gene_variant 51 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 intron_variant 53 chr2 92.36505 92.37487 4.660140 1
228366 ENSMUSG00000040434 Large2 LARGE xylosyl- and glucuronyltransferase 2 missense_variant 12 chr2 92.36505 92.37487 4.660140 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 downstream_gene_variant 14 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 upstream_gene_variant 2 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 3_prime_UTR_variant 40 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 intron_variant 7 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 missense_variant 2 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 synonymous_variant 7 chr2 92.45276 92.46054 5.004764 1
228368 ENSMUSG00000049922 Slc35c1 solute carrier family 35, member C1 5_prime_UTR_variant 8 chr2 92.45276 92.46054 5.004764 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 synonymous_variant 4 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 3_prime_UTR_variant 9 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 downstream_gene_variant 7 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 5_prime_UTR_variant 4 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 intron_variant 65 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 downstream_gene_variant 36 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 non_coding_transcript_exon_variant 66 chr2 93.20176 93.33450 7.434495 1
241556 ENSMUSG00000027217 Tspan18 tetraspanin 18 non_coding_transcript_variant 66 chr2 93.20176 93.33450 7.434495 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 upstream_gene_variant 7 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 5_prime_UTR_variant 4 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 non_coding_transcript_exon_variant 43 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 non_coding_transcript_variant 43 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 downstream_gene_variant 9 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 downstream_gene_variant 33 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 intron_variant 5 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 synonymous_variant 3 chr2 93.18755 93.20176 7.563076 1
277414 ENSMUSG00000068735 Trp53i11 transformation related protein 53 inducible protein 11 3_prime_UTR_variant 31 chr2 93.18755 93.20176 7.563076 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene non_coding_transcript_exon_variant 5 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene non_coding_transcript_variant 57 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene non_coding_transcript_exon_variant 25 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene non_coding_transcript_variant 25 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene downstream_gene_variant 2 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene intron_variant 52 chr2 92.40889 92.43231 4.566513 1
320507 ENSMUSG00000084781 D930015M05Rik RIKEN cDNA D930015M05 gene upstream_gene_variant 13 chr2 92.40889 92.43231 4.566513 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) 3_prime_UTR_variant 38 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) non_coding_transcript_variant 169 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) downstream_gene_variant 148 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) synonymous_variant 36 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) non_coding_transcript_exon_variant 157 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) upstream_gene_variant 132 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) missense_variant 16 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) intron_variant 110 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) NMD_transcript_variant 96 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) splice_region_variant 6 chr2 93.83347 93.84994 4.470428 1
329470 ENSMUSG00000040272 Accs 1-aminocyclopropane-1-carboxylate synthase (non-functional) 5_prime_UTR_variant 22 chr2 93.83347 93.84994 4.470428 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like non_coding_transcript_exon_variant 48 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like 3_prime_UTR_variant 6 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like missense_variant 8 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like upstream_gene_variant 43 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like non_coding_transcript_variant 54 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like downstream_gene_variant 18 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like synonymous_variant 16 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like initiator_codon_variant 6 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like splice_region_variant 3 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like intron_variant 36 chr2 93.85536 93.86916 2.830584 1
381411 ENSMUSG00000075023 Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like 5_prime_UTR_variant 16 chr2 93.85536 93.86916 2.830584 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene non_coding_transcript_exon_variant 88 chr2 93.02796 93.04473 3.977306 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene upstream_gene_variant 39 chr2 93.02796 93.04473 3.977306 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene downstream_gene_variant 3 chr2 93.02796 93.04473 3.977306 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene downstream_gene_variant 13 chr2 93.02796 93.04473 3.977306 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene non_coding_transcript_variant 88 chr2 93.02796 93.04473 3.977306 1
433456 ENSMUSG00000075027 4631405J19Rik RIKEN cDNA 4631405J19 gene intron_variant 25 chr2 93.02796 93.04473 3.977306 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 3_prime_UTR_variant 44 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 downstream_gene_variant 44 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 missense_variant 7 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 non_coding_transcript_exon_variant 62 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 non_coding_transcript_variant 62 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 synonymous_variant 4 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 intron_variant 9 chr2 94.03269 94.15796 7.309973 1
56348 ENSMUSG00000027195 Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 upstream_gene_variant 1 chr2 94.03269 94.15796 7.309973 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 synonymous_variant 4 chr2 93.95581 93.95720 5.763328 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 3_prime_UTR_variant 6 chr2 93.95581 93.95720 5.763328 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 5_prime_UTR_variant 1 chr2 93.95581 93.95720 5.763328 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 upstream_gene_variant 1 chr2 93.95581 93.95720 5.763328 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 missense_variant 2 chr2 93.95581 93.95720 5.763328 1
620695 ENSMUSG00000087006 Gm13889 predicted gene 13889 upstream_gene_variant 3 chr2 93.95581 93.95720 5.763328 1
639658 ENSMUSG00000085852 Gm13807 predicted gene 13807 non_coding_transcript_variant 9 chr2 93.40355 93.41783 4.489932 1
639658 ENSMUSG00000085852 Gm13807 predicted gene 13807 non_coding_transcript_exon_variant 9 chr2 93.40355 93.41783 4.489932 1
639658 ENSMUSG00000085852 Gm13807 predicted gene 13807 downstream_gene_variant 1 chr2 93.40355 93.41783 4.489932 1
639658 ENSMUSG00000085852 Gm13807 predicted gene 13807 downstream_gene_variant 40 chr2 93.40355 93.41783 4.489932 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase non_coding_transcript_exon_variant 2 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase non_coding_transcript_variant 17 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase downstream_gene_variant 8 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase upstream_gene_variant 14 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase 3_prime_UTR_variant 2 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase intron_variant 15 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase 3_prime_UTR_variant 15 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase downstream_gene_variant 22 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase intron_variant 23 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase upstream_gene_variant 23 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase non_coding_transcript_exon_variant 45 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase 5_prime_UTR_variant 7 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase synonymous_variant 8 chr2 93.95682 94.01081 6.680112 1
69113 ENSMUSG00000040174 Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase non_coding_transcript_variant 45 chr2 93.95682 94.01081 6.680112 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 intron_variant 12 chr2 93.98003 93.98358 2.717360 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 non_coding_transcript_exon_variant 23 chr2 93.98003 93.98358 2.717360 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 downstream_gene_variant 4 chr2 93.98003 93.98358 2.717360 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 non_coding_transcript_exon_variant 3 chr2 93.98003 93.98358 2.717360 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 non_coding_transcript_variant 23 chr2 93.98003 93.98358 2.717360 1
70852 ENSMUSG00000027196 Alkbh3os1 alkB homolog 3, opposite strand 1 non_coding_transcript_variant 15 chr2 93.98003 93.98358 2.717360 1
723953 ENSMUSG00000065511 Mir129-2 microRNA 129-2 non_coding_transcript_exon_variant 1 chr2 94.24136 94.24145 2.105493 1
723953 ENSMUSG00000065511 Mir129-2 microRNA 129-2 non_coding_transcript_variant 1 chr2 94.24136 94.24145 2.105493 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene upstream_gene_variant 1 chr2 92.38292 92.38571 4.740904 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene downstream_gene_variant 4 chr2 92.38292 92.38571 4.740904 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene downstream_gene_variant 1 chr2 92.38292 92.38571 4.740904 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene 3_prime_UTR_variant 4 chr2 92.38292 92.38571 4.740904 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene downstream_gene_variant 26 chr2 92.38292 92.38571 4.740904 1
75641 ENSMUSG00000044916 1700029I15Rik RIKEN cDNA 1700029I15 gene intron_variant 10 chr2 92.38292 92.38571 4.740904 1
76969 ENSMUSG00000027221 Chst1 carbohydrate sulfotransferase 1 3_prime_UTR_variant 8 chr2 92.59971 92.61525 4.787893 1
76969 ENSMUSG00000027221 Chst1 carbohydrate sulfotransferase 1 synonymous_variant 6 chr2 92.59971 92.61525 4.787893 1
76969 ENSMUSG00000027221 Chst1 carbohydrate sulfotransferase 1 5_prime_UTR_variant 2 chr2 92.59971 92.61525 4.787893 1
80976 ENSMUSG00000027220 Syt13 synaptotagmin XIII 3_prime_UTR_variant 39 chr2 92.91510 92.95606 5.012868 1
80976 ENSMUSG00000027220 Syt13 synaptotagmin XIII synonymous_variant 3 chr2 92.91510 92.95606 5.012868 1
80976 ENSMUSG00000027220 Syt13 synaptotagmin XIII missense_variant 1 chr2 92.91510 92.95606 5.012868 1

Lung S100a8: Chr 3

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
mtb_burden 3 92.81493 6.490463 87.81493 97.81493
lung_s100a8 3 90.74194 18.557481 90.52078 91.97561

The lung S100a8 QTL on Chr 3 is colocated with one other QTL for lung: Mtb Burden.

It’s difficult to say if these are the same peak. WSB and PWK are los in both plots, but the M.tb peak has a much lower LOD and less separattion of the effects.

Below is the association mapping plot for lung S100a8.

There are 14 unique genes in the QTL interval. We measured expression for 14 of these genes.

Plot a histogram of the correlations.

The correlations are all distributed oddly, with a strange spike between 0.2 and 0.4. Plot the gene with the highest correlation vs. the phenotype, colored by DO generation.

Produce a list of genes with mean expression and correlation p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr bonf.p.value
20196 ENSMUSG00000042312 S100a13 S100 calcium binding protein A13 synonymous_variant 2 chr3 90.51444 90.52458 6.326419 0.0000280
20196 ENSMUSG00000042312 S100a13 S100 calcium binding protein A13 downstream_gene_variant 6 chr3 90.51444 90.52458 6.326419 0.0000280
20196 ENSMUSG00000042312 S100a13 S100 calcium binding protein A13 missense_variant 1 chr3 90.51444 90.52458 6.326419 0.0000280
20196 ENSMUSG00000042312 S100a13 S100 calcium binding protein A13 3_prime_UTR_variant 1 chr3 90.51444 90.52458 6.326419 0.0000280
20197 ENSMUSG00000001021 S100a3 S100 calcium binding protein A3 3_prime_UTR_variant 10 chr3 90.58466 90.60270 3.949224 0.0078416
20197 ENSMUSG00000001021 S100a3 S100 calcium binding protein A3 5_prime_UTR_variant 1 chr3 90.58466 90.60270 3.949224 0.0078416
20197 ENSMUSG00000001021 S100a3 S100 calcium binding protein A3 downstream_gene_variant 2 chr3 90.58466 90.60270 3.949224 0.0078416
20198 ENSMUSG00000001020 S100a4 S100 calcium binding protein A4 upstream_gene_variant 11 chr3 90.60190 90.60604 5.971901 0.1683160
20198 ENSMUSG00000001020 S100a4 S100 calcium binding protein A4 downstream_gene_variant 2 chr3 90.60190 90.60604 5.971901 0.1683160
20198 ENSMUSG00000001020 S100a4 S100 calcium binding protein A4 3_prime_UTR_variant 2 chr3 90.60190 90.60604 5.971901 0.1683160
20198 ENSMUSG00000001020 S100a4 S100 calcium binding protein A4 downstream_gene_variant 2 chr3 90.60190 90.60604 5.971901 0.1683160
20199 ENSMUSG00000001023 S100a5 S100 calcium binding protein A5 upstream_gene_variant 2 chr3 90.60852 90.61178 2.354976 0.3948673
20199 ENSMUSG00000001023 S100a5 S100 calcium binding protein A5 5_prime_UTR_variant 2 chr3 90.60852 90.61178 2.354976 0.3948673
20199 ENSMUSG00000001023 S100a5 S100 calcium binding protein A5 3_prime_UTR_variant 2 chr3 90.60852 90.61178 2.354976 0.3948673
20199 ENSMUSG00000001023 S100a5 S100 calcium binding protein A5 downstream_gene_variant 32 chr3 90.60852 90.61178 2.354976 0.3948673
20200 ENSMUSG00000001025 S100a6 S100 calcium binding protein A6 (calcyclin) upstream_gene_variant 4 chr3 90.61288 90.62418 8.287085 0.0000009
20200 ENSMUSG00000001025 S100a6 S100 calcium binding protein A6 (calcyclin) 5_prime_UTR_variant 21 chr3 90.61288 90.62418 8.287085 0.0000009
20200 ENSMUSG00000001025 S100a6 S100 calcium binding protein A6 (calcyclin) splice_region_variant 2 chr3 90.61288 90.62418 8.287085 0.0000009
20200 ENSMUSG00000001025 S100a6 S100 calcium binding protein A6 (calcyclin) intron_variant 6 chr3 90.61288 90.62418 8.287085 0.0000009
20200 ENSMUSG00000001025 S100a6 S100 calcium binding protein A6 (calcyclin) synonymous_variant 5 chr3 90.61288 90.62418 8.287085 0.0000009
20201 ENSMUSG00000056054 S100a8 S100 calcium binding protein A8 (calgranulin A) 5_prime_UTR_variant 6 chr3 90.66898 90.67003 4.049307 0.0000000
20201 ENSMUSG00000056054 S100a8 S100 calcium binding protein A8 (calgranulin A) intron_variant 13 chr3 90.66898 90.67003 4.049307 0.0000000
20201 ENSMUSG00000056054 S100a8 S100 calcium binding protein A8 (calgranulin A) missense_variant 32 chr3 90.66898 90.67003 4.049307 0.0000000
20201 ENSMUSG00000056054 S100a8 S100 calcium binding protein A8 (calgranulin A) splice_region_variant 2 chr3 90.66898 90.67003 4.049307 0.0000000
20201 ENSMUSG00000056054 S100a8 S100 calcium binding protein A8 (calgranulin A) synonymous_variant 6 chr3 90.66898 90.67003 4.049307 0.0000000
20202 ENSMUSG00000056071 S100a9 S100 calcium binding protein A9 (calgranulin B) synonymous_variant 3 chr3 90.69263 90.69572 5.584239 0.0000000
20202 ENSMUSG00000056071 S100a9 S100 calcium binding protein A9 (calgranulin B) missense_variant 2 chr3 90.69263 90.69572 5.584239 0.0000000
229550 ENSMUSG00000091175 S100a7l2 S100 calcium binding protein A7 like 2 missense_variant 1 chr3 91.08814 91.09080 2.352451 0.0367011
381493 ENSMUSG00000063767 S100a7a S100 calcium binding protein A7A 5_prime_UTR_variant 4 chr3 90.65430 90.65867 4.209865 0.0107132
381493 ENSMUSG00000063767 S100a7a S100 calcium binding protein A7A missense_variant 1 chr3 90.65430 90.65867 4.209865 0.0107132
381493 ENSMUSG00000063767 S100a7a S100 calcium binding protein A7A synonymous_variant 2 chr3 90.65430 90.65867 4.209865 0.0107132
381493 ENSMUSG00000063767 S100a7a S100 calcium binding protein A7A 3_prime_UTR_variant 5 chr3 90.65430 90.65867 4.209865 0.0107132
381493 ENSMUSG00000063767 S100a7a S100 calcium binding protein A7A downstream_gene_variant 3 chr3 90.65430 90.65867 4.209865 0.0107132
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 5_prime_UTR_variant 2 chr3 90.72691 90.74152 3.083661 0.0001877
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 intron_variant 1 chr3 90.72691 90.74152 3.083661 0.0001877
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 non_coding_transcript_exon_variant 11 chr3 90.72691 90.74152 3.083661 0.0001877
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 non_coding_transcript_variant 11 chr3 90.72691 90.74152 3.083661 0.0001877
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 3_prime_UTR_variant 10 chr3 90.72691 90.74152 3.083661 0.0001877
384997 ENSMUSG00000042250 Pglyrp4 peptidoglycan recognition protein 4 downstream_gene_variant 10 chr3 90.72691 90.74152 3.083661 0.0001877
619677 ENSMUSG00000086377 4930529C04Rik zinc finger, BED domain containing 4 pseudogene non_coding_transcript_exon_variant 6 chr3 91.07166 91.07519 3.334494 0.9963280
619677 ENSMUSG00000086377 4930529C04Rik zinc finger, BED domain containing 4 pseudogene non_coding_transcript_variant 6 chr3 91.07166 91.07519 3.334494 0.9963280
628324 ENSMUSG00000094018 S100a2 S100 calcium binding protein A2 missense_variant 12 chr3 90.56036 90.59153 3.685011 0.0218900
628324 ENSMUSG00000094018 S100a2 S100 calcium binding protein A2 upstream_gene_variant 2 chr3 90.56036 90.59153 3.685011 0.0218900
66166 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 upstream_gene_variant 4 chr3 90.52686 90.52884 5.086955 0.0096937
66166 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 intron_variant 6 chr3 90.52686 90.52884 5.086955 0.0096937
66166 ENSMUSG00000042306 S100a14 S100 calcium binding protein A14 synonymous_variant 2 chr3 90.52686 90.52884 5.086955 0.0096937
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 intron_variant 6 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 non_coding_transcript_variant 27 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 5_prime_UTR_variant 6 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 downstream_gene_variant 29 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 non_coding_transcript_exon_variant 21 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 upstream_gene_variant 4 chr3 90.53725 90.54315 5.364116 1.0000000
67860 ENSMUSG00000074457 S100a16 S100 calcium binding protein A16 3_prime_UTR_variant 29 chr3 90.53725 90.54315 5.364116 1.0000000

Serum Cxcl5: Chr 5

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
lung_cxcl5 5 91.73410 6.724962 86.73410 96.7341
serum_cxcl5 5 77.13883 9.683969 75.91675 91.7341

The serum Cxcl5 QTL on Chr 5 is colocated with one other QTL for lung: lung Cxcl5.

It’s difficult to say if these are the same peak. The allele effects are different.

Below is the association mapping plot for serum Cxcl5.

There are 108 unique genes in the QTL interval. We measured expression for 106 of these genes.

Plot a histogram of the correlations.

The correlations are distributed as expected. Plot the gene with the highest correlation vs. the phenotype, colored by DO generation.

Produce a list of genes with mean expression and correlation p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr bonf.p.value
100316803 ENSMUSG00000080586 Mir1187 microRNA 1187 non_coding_transcript_variant 1 chr5 82.79894 82.79906 1.539463 1.0000000
100316803 ENSMUSG00000080586 Mir1187 microRNA 1187 non_coding_transcript_exon_variant 1 chr5 82.79894 82.79906 1.539463 1.0000000
100559 ENSMUSG00000061906 Ugt2b38 UDP glucuronosyltransferase 2 family, polypeptide B38 synonymous_variant 3 chr5 87.40994 87.42420 1.741129 1.0000000
100559 ENSMUSG00000061906 Ugt2b38 UDP glucuronosyltransferase 2 family, polypeptide B38 missense_variant 10 chr5 87.40994 87.42420 1.741129 1.0000000
100559 ENSMUSG00000061906 Ugt2b38 UDP glucuronosyltransferase 2 family, polypeptide B38 3_prime_UTR_variant 1 chr5 87.40994 87.42420 1.741129 1.0000000
100628577 ENSMUSG00000093061 Mir5098 microRNA 5098 mature_miRNA_variant 1 chr5 77.27276 77.27284 NA NA
100727 ENSMUSG00000029260 Ugt2b34 UDP glucuronosyltransferase 2 family, polypeptide B34 3_prime_UTR_variant 31 chr5 86.88977 86.90694 4.430571 1.0000000
100727 ENSMUSG00000029260 Ugt2b34 UDP glucuronosyltransferase 2 family, polypeptide B34 intron_variant 13 chr5 86.88977 86.90694 4.430571 1.0000000
100727 ENSMUSG00000029260 Ugt2b34 UDP glucuronosyltransferase 2 family, polypeptide B34 missense_variant 3 chr5 86.88977 86.90694 4.430571 1.0000000
100727 ENSMUSG00000029260 Ugt2b34 UDP glucuronosyltransferase 2 family, polypeptide B34 synonymous_variant 4 chr5 86.88977 86.90694 4.430571 1.0000000
104443 ENSMUSG00000035528 Npffr2 neuropeptide FF receptor 2 synonymous_variant 7 chr5 89.52743 89.58374 3.151722 1.0000000
104443 ENSMUSG00000035528 Npffr2 neuropeptide FF receptor 2 3_prime_UTR_variant 7 chr5 89.52743 89.58374 3.151722 1.0000000
104443 ENSMUSG00000035528 Npffr2 neuropeptide FF receptor 2 missense_variant 11 chr5 89.52743 89.58374 3.151722 1.0000000
104443 ENSMUSG00000035528 Npffr2 neuropeptide FF receptor 2 5_prime_UTR_variant 5 chr5 89.52743 89.58374 3.151722 1.0000000
112417 ENSMUSG00000057425 Ugt2b37 UDP glucuronosyltransferase 2 family, polypeptide B37 missense_variant 8 chr5 87.24049 87.25480 2.242334 1.0000000
112417 ENSMUSG00000057425 Ugt2b37 UDP glucuronosyltransferase 2 family, polypeptide B37 synonymous_variant 10 chr5 87.24049 87.25480 2.242334 1.0000000
112417 ENSMUSG00000057425 Ugt2b37 UDP glucuronosyltransferase 2 family, polypeptide B37 3_prime_UTR_variant 5 chr5 87.24049 87.25480 2.242334 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein missense_variant 3 chr5 90.49074 90.50891 3.950631 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein synonymous_variant 18 chr5 90.49074 90.50891 3.950631 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein 3_prime_UTR_variant 12 chr5 90.49074 90.50891 3.950631 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein 5_prime_UTR_variant 2 chr5 90.49074 90.50891 3.950631 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein intron_variant 19 chr5 90.49074 90.50891 3.950631 1.0000000
11576 ENSMUSG00000054932 Afp alpha fetoprotein splice_region_variant 1 chr5 90.49074 90.50891 3.950631 1.0000000
11657 ENSMUSG00000029368 Alb albumin intron_variant 6 chr5 90.46090 90.47660 3.918060 1.0000000
11657 ENSMUSG00000029368 Alb albumin missense_variant 4 chr5 90.46090 90.47660 3.918060 1.0000000
11657 ENSMUSG00000029368 Alb albumin synonymous_variant 9 chr5 90.46090 90.47660 3.918060 1.0000000
11698 ENSMUSG00000029288 Ambn ameloblastin missense_variant 2 chr5 88.45599 88.46853 3.048604 1.0000000
11698 ENSMUSG00000029288 Ambn ameloblastin 3_prime_UTR_variant 1 chr5 88.45599 88.46853 3.048604 1.0000000
11839 ENSMUSG00000029378 Areg amphiregulin 5_prime_UTR_variant 5 chr5 91.13960 91.14843 4.486210 1.0000000
11839 ENSMUSG00000029378 Areg amphiregulin missense_variant 1 chr5 91.13960 91.14843 4.486210 1.0000000
11839 ENSMUSG00000029378 Areg amphiregulin 3_prime_UTR_variant 2 chr5 91.13960 91.14843 4.486210 1.0000000
11839 ENSMUSG00000029378 Areg amphiregulin upstream_gene_variant 2 chr5 91.13960 91.14843 4.486210 1.0000000
11839 ENSMUSG00000029378 Areg amphiregulin synonymous_variant 4 chr5 91.13960 91.14843 4.486210 1.0000000
12223 ENSMUSG00000082361 Btc betacellulin, epidermal growth factor family member 3_prime_UTR_variant 80 chr5 91.35726 91.40299 3.681392 1.0000000
12223 ENSMUSG00000082361 Btc betacellulin, epidermal growth factor family member intron_variant 29 chr5 91.35726 91.40299 3.681392 1.0000000
12223 ENSMUSG00000082361 Btc betacellulin, epidermal growth factor family member synonymous_variant 4 chr5 91.35726 91.40299 3.681392 1.0000000
12223 ENSMUSG00000082361 Btc betacellulin, epidermal growth factor family member 5_prime_UTR_variant 6 chr5 91.35726 91.40299 3.681392 1.0000000
12617 ENSMUSG00000029253 Cenpc1 centromere protein C1 intron_variant 31 chr5 86.01202 86.06558 5.115153 1.0000000
12617 ENSMUSG00000029253 Cenpc1 centromere protein C1 3_prime_UTR_variant 1 chr5 86.01202 86.06558 5.115153 1.0000000
12617 ENSMUSG00000029253 Cenpc1 centromere protein C1 synonymous_variant 11 chr5 86.01202 86.06558 5.115153 1.0000000
12617 ENSMUSG00000029253 Cenpc1 centromere protein C1 5_prime_UTR_variant 4 chr5 86.01202 86.06558 5.115153 1.0000000
12617 ENSMUSG00000029253 Cenpc1 centromere protein C1 missense_variant 12 chr5 86.01202 86.06558 5.115153 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput synonymous_variant 5 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput downstream_gene_variant 21 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput 3_prime_UTR_variant 53 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput intron_variant 27 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput 5_prime_UTR_variant 2 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput downstream_gene_variant 4 chr5 76.20987 76.30479 8.460944 1.0000000
12753 ENSMUSG00000029238 Clock circadian locomotor output cycles kaput upstream_gene_variant 11 chr5 76.20987 76.30479 8.460944 1.0000000
12990 ENSMUSG00000070702 Csn1s1 casein alpha s1 missense_variant 7 chr5 87.66621 87.68258 2.081382 1.0000000
12990 ENSMUSG00000070702 Csn1s1 casein alpha s1 intron_variant 31 chr5 87.66621 87.68258 2.081382 1.0000000
12990 ENSMUSG00000070702 Csn1s1 casein alpha s1 3_prime_UTR_variant 11 chr5 87.66621 87.68258 2.081382 1.0000000
12990 ENSMUSG00000070702 Csn1s1 casein alpha s1 synonymous_variant 5 chr5 87.66621 87.68258 2.081382 1.0000000
12991 ENSMUSG00000063157 Csn2 casein beta 3_prime_UTR_variant 24 chr5 87.69262 87.69963 3.908905 1.0000000
12991 ENSMUSG00000063157 Csn2 casein beta upstream_gene_variant 3 chr5 87.69262 87.69963 3.908905 1.0000000
12991 ENSMUSG00000063157 Csn2 casein beta missense_variant 3 chr5 87.69262 87.69963 3.908905 1.0000000
12991 ENSMUSG00000063157 Csn2 casein beta intron_variant 52 chr5 87.69262 87.69963 3.908905 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B 5_prime_UTR_variant 1 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B missense_variant 3 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B intron_variant 16 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B upstream_gene_variant 1 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B synonymous_variant 1 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B downstream_gene_variant 2 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B downstream_gene_variant 3 chr5 87.80808 87.82443 1.944694 1.0000000
12992 ENSMUSG00000061388 Csn1s2b casein alpha s2-like B 3_prime_UTR_variant 28 chr5 87.80808 87.82443 1.944694 1.0000000
12993 ENSMUSG00000061937 Csn1s2a casein alpha s2-like A synonymous_variant 2 chr5 87.77457 87.78880 2.622745 1.0000000
12993 ENSMUSG00000061937 Csn1s2a casein alpha s2-like A intron_variant 12 chr5 87.77457 87.78880 2.622745 1.0000000
12993 ENSMUSG00000061937 Csn1s2a casein alpha s2-like A missense_variant 6 chr5 87.77457 87.78880 2.622745 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa non_coding_transcript_exon_variant 27 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa splice_region_variant 2 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa non_coding_transcript_variant 27 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa upstream_gene_variant 7 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa missense_variant 2 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa 5_prime_UTR_variant 2 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa 3_prime_UTR_variant 24 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa downstream_gene_variant 32 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa intron_variant 35 chr5 87.92558 87.93267 3.288057 1.0000000
12994 ENSMUSG00000001622 Csn3 casein kappa synonymous_variant 8 chr5 87.92558 87.93267 3.288057 1.0000000
13178 ENSMUSG00000029366 Dck deoxycytidine kinase upstream_gene_variant 41 chr5 88.76500 88.78328 5.397476 1.0000000
13178 ENSMUSG00000029366 Dck deoxycytidine kinase 3_prime_UTR_variant 32 chr5 88.76500 88.78328 5.397476 1.0000000
13178 ENSMUSG00000029366 Dck deoxycytidine kinase 5_prime_UTR_variant 4 chr5 88.76500 88.78328 5.397476 1.0000000
13178 ENSMUSG00000029366 Dck deoxycytidine kinase synonymous_variant 5 chr5 88.76500 88.78328 5.397476 1.0000000
13801 ENSMUSG00000029286 Enam enamelin synonymous_variant 25 chr5 88.48798 88.50605 2.283901 1.0000000
13801 ENSMUSG00000029286 Enam enamelin missense_variant 31 chr5 88.48798 88.50605 2.283901 1.0000000
13801 ENSMUSG00000029286 Enam enamelin 3_prime_UTR_variant 15 chr5 88.48798 88.50605 2.283901 1.0000000
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 non_coding_transcript_exon_variant 64 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 missense_variant 3 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 5_prime_UTR_variant 19 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 upstream_gene_variant 15 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 downstream_gene_variant 29 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 intron_variant 48 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 3_prime_UTR_variant 34 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 synonymous_variant 23 chr5 84.05476 84.41738 3.162902 0.3014720
13839 ENSMUSG00000029245 Epha5 Eph receptor A5 non_coding_transcript_variant 64 chr5 84.05476 84.41738 3.162902 0.3014720
13874 ENSMUSG00000029377 Ereg epiregulin 3_prime_UTR_variant 60 chr5 91.07462 91.09365 5.274770 1.0000000
13874 ENSMUSG00000029377 Ereg epiregulin 5_prime_UTR_variant 2 chr5 91.07462 91.09365 5.274770 1.0000000
13874 ENSMUSG00000029377 Ereg epiregulin missense_variant 1 chr5 91.07462 91.09365 5.274770 1.0000000
13874 ENSMUSG00000029377 Ereg epiregulin synonymous_variant 1 chr5 91.07462 91.09365 5.274770 1.0000000
14473 ENSMUSG00000035540 Gc vitamin D binding protein 5_prime_UTR_variant 4 chr5 89.41752 89.45790 3.541866 1.0000000
14473 ENSMUSG00000035540 Gc vitamin D binding protein 3_prime_UTR_variant 5 chr5 89.41752 89.45790 3.541866 1.0000000
14473 ENSMUSG00000035540 Gc vitamin D binding protein intron_variant 2 chr5 89.41752 89.45790 3.541866 1.0000000
14473 ENSMUSG00000035540 Gc vitamin D binding protein missense_variant 5 chr5 89.41752 89.45790 3.541866 1.0000000
14473 ENSMUSG00000035540 Gc vitamin D binding protein synonymous_variant 10 chr5 89.41752 89.45790 3.541866 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor downstream_gene_variant 34 chr5 86.18075 86.19790 3.394041 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor 3_prime_UTR_variant 56 chr5 86.18075 86.19790 3.394041 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor synonymous_variant 6 chr5 86.18075 86.19790 3.394041 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor 5_prime_UTR_variant 4 chr5 86.18075 86.19790 3.394041 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor upstream_gene_variant 1 chr5 86.18075 86.19790 3.394041 1.0000000
14715 ENSMUSG00000029255 Gnrhr gonadotropin releasing hormone receptor intron_variant 22 chr5 86.18075 86.19790 3.394041 1.0000000
14825 ENSMUSG00000029380 Cxcl1 chemokine (C-X-C motif) ligand 1 5_prime_UTR_variant 2 chr5 90.89124 90.89311 5.982533 1.0000000
14825 ENSMUSG00000029380 Cxcl1 chemokine (C-X-C motif) ligand 1 synonymous_variant 4 chr5 90.89124 90.89311 5.982533 1.0000000
14825 ENSMUSG00000029380 Cxcl1 chemokine (C-X-C motif) ligand 1 3_prime_UTR_variant 10 chr5 90.89124 90.89311 5.982533 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain intron_variant 5 chr5 88.51981 88.52789 7.619204 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain 3_prime_UTR_variant 38 chr5 88.51981 88.52789 7.619204 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain downstream_gene_variant 52 chr5 88.51981 88.52789 7.619204 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain 5_prime_UTR_variant 5 chr5 88.51981 88.52789 7.619204 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain synonymous_variant 2 chr5 88.51981 88.52789 7.619204 1.0000000
16069 ENSMUSG00000067149 Jchain immunoglobulin joining chain missense_variant 4 chr5 88.51981 88.52789 7.619204 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor intron_variant 58 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor missense_variant 1 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor non_coding_transcript_exon_variant 30 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor 5_prime_UTR_variant 6 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor 3_prime_UTR_variant 11 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor downstream_gene_variant 48 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor non_coding_transcript_variant 30 chr5 75.93283 75.97846 8.473123 1.0000000
16542 ENSMUSG00000062960 Kdr kinase insert domain protein receptor synonymous_variant 22 chr5 75.93283 75.97846 8.473123 1.0000000
17830 ENSMUSG00000064156 Prol1 proline rich, lacrimal 1 5_prime_UTR_variant 2 chr5 88.31731 88.32881 2.667356 1.0000000
17830 ENSMUSG00000064156 Prol1 proline rich, lacrimal 1 3_prime_UTR_variant 4 chr5 88.31731 88.32881 2.667356 1.0000000
17830 ENSMUSG00000064156 Prol1 proline rich, lacrimal 1 synonymous_variant 7 chr5 88.31731 88.32881 2.667356 1.0000000
17830 ENSMUSG00000064156 Prol1 proline rich, lacrimal 1 missense_variant 19 chr5 88.31731 88.32881 2.667356 1.0000000
194597 ENSMUSG00000072845 Tmprss11a transmembrane protease, serine 11a 5_prime_UTR_variant 2 chr5 86.41041 86.46899 2.862274 1.0000000
194597 ENSMUSG00000072845 Tmprss11a transmembrane protease, serine 11a missense_variant 4 chr5 86.41041 86.46899 2.862274 1.0000000
194597 ENSMUSG00000072845 Tmprss11a transmembrane protease, serine 11a 3_prime_UTR_variant 10 chr5 86.41041 86.46899 2.862274 1.0000000
194597 ENSMUSG00000072845 Tmprss11a transmembrane protease, serine 11a synonymous_variant 1 chr5 86.41041 86.46899 2.862274 1.0000000
194597 ENSMUSG00000072845 Tmprss11a transmembrane protease, serine 11a splice_region_variant 1 chr5 86.41041 86.46899 2.862274 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor synonymous_variant 5 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor intron_variant 1 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor missense_variant 8 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor 5_prime_UTR_variant 5 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor upstream_gene_variant 4 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor 3_prime_UTR_variant 10 chr5 77.26549 77.28643 6.341179 1.0000000
19712 ENSMUSG00000029249 Rest RE1-silencing transcription factor intron_variant 1 chr5 77.26549 77.28643 6.341179 1.0000000
20309 ENSMUSG00000029375 Cxcl15 chemokine (C-X-C motif) ligand 15 3_prime_UTR_variant 5 chr5 90.79453 90.80307 10.310390 1.0000000
20309 ENSMUSG00000029375 Cxcl15 chemokine (C-X-C motif) ligand 15 missense_variant 4 chr5 90.79453 90.80307 10.310390 1.0000000
20310 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 missense_variant 2 chr5 90.90387 90.90594 4.690301 1.0000000
20310 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 3_prime_UTR_variant 38 chr5 90.90387 90.90594 4.690301 1.0000000
20310 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 synonymous_variant 12 chr5 90.90387 90.90594 4.690301 1.0000000
20310 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 splice_region_variant 2 chr5 90.90387 90.90594 4.690301 1.0000000
20310 ENSMUSG00000058427 Cxcl2 chemokine (C-X-C motif) ligand 2 intron_variant 15 chr5 90.90387 90.90594 4.690301 1.0000000
20311 ENSMUSG00000029371 Cxcl5 chemokine (C-X-C motif) ligand 5 intron_variant 5 chr5 90.75936 90.76162 6.807721 1.0000000
20311 ENSMUSG00000029371 Cxcl5 chemokine (C-X-C motif) ligand 5 3_prime_UTR_variant 16 chr5 90.75936 90.76162 6.807721 1.0000000
20311 ENSMUSG00000029371 Cxcl5 chemokine (C-X-C motif) ligand 5 5_prime_UTR_variant 2 chr5 90.75936 90.76162 6.807721 1.0000000
20311 ENSMUSG00000029371 Cxcl5 chemokine (C-X-C motif) ligand 5 missense_variant 5 chr5 90.75936 90.76162 6.807721 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A intron_variant 6 chr5 87.96952 88.00853 2.815030 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A synonymous_variant 5 chr5 87.96952 88.00853 2.815030 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A 3_prime_UTR_variant 2 chr5 87.96952 88.00853 2.815030 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A upstream_gene_variant 1 chr5 87.96952 88.00853 2.815030 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A 5_prime_UTR_variant 4 chr5 87.96952 88.00853 2.815030 1.0000000
20599 ENSMUSG00000029280 Smr3a submaxillary gland androgen regulated protein 3A missense_variant 6 chr5 87.96952 88.00853 2.815030 1.0000000
20600 ENSMUSG00000029281 Smr2 submaxillary gland androgen regulated protein 2 synonymous_variant 1 chr5 88.08656 88.10905 2.990139 1.0000000
20600 ENSMUSG00000029281 Smr2 submaxillary gland androgen regulated protein 2 missense_variant 2 chr5 88.08656 88.10905 2.990139 1.0000000
20600 ENSMUSG00000029281 Smr2 submaxillary gland androgen regulated protein 2 intron_variant 5 chr5 88.08656 88.10905 2.990139 1.0000000
20860 ENSMUSG00000029272 Sult1e1 sulfotransferase family 1E, member 1 missense_variant 1 chr5 87.57597 87.59159 2.408023 1.0000000
20860 ENSMUSG00000029272 Sult1e1 sulfotransferase family 1E, member 1 3_prime_UTR_variant 2 chr5 87.57597 87.59159 2.408023 1.0000000
20860 ENSMUSG00000029272 Sult1e1 sulfotransferase family 1E, member 1 synonymous_variant 3 chr5 87.57597 87.59159 2.408023 1.0000000
20860 ENSMUSG00000029272 Sult1e1 sulfotransferase family 1E, member 1 5_prime_UTR_variant 3 chr5 87.57597 87.59159 2.408023 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 missense_variant 2 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 non_coding_transcript_exon_variant 21 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 non_coding_transcript_variant 21 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 5_prime_UTR_variant 5 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 upstream_gene_variant 13 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 downstream_gene_variant 15 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 downstream_gene_variant 35 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 synonymous_variant 12 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 intron_variant 8 chr5 76.18388 76.20924 7.899548 1.0000000
21982 ENSMUSG00000029234 Tmem165 transmembrane protein 165 3_prime_UTR_variant 4 chr5 76.18388 76.20924 7.899548 1.0000000
22238 ENSMUSG00000054630 Ugt2b5 UDP glucuronosyltransferase 2 family, polypeptide B5 missense_variant 3 chr5 87.12496 87.14032 1.720344 1.0000000
22238 ENSMUSG00000054630 Ugt2b5 UDP glucuronosyltransferase 2 family, polypeptide B5 3_prime_UTR_variant 2 chr5 87.12496 87.14032 1.720344 1.0000000
22238 ENSMUSG00000054630 Ugt2b5 UDP glucuronosyltransferase 2 family, polypeptide B5 synonymous_variant 5 chr5 87.12496 87.14032 1.720344 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase downstream_gene_variant 86 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase NMD_transcript_variant 178 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase missense_variant 54 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase splice_region_variant 5 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase downstream_gene_variant 52 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase 3_prime_UTR_variant 97 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase intron_variant 62 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase 5_prime_UTR_variant 27 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase non_coding_transcript_exon_variant 157 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase non_coding_transcript_variant 159 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase synonymous_variant 61 chr5 76.87366 76.90551 4.557722 1.0000000
231326 ENSMUSG00000055923 Aasdh aminoadipate-semialdehyde dehydrogenase upstream_gene_variant 94 chr5 76.87366 76.90551 4.557722 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase downstream_gene_variant 55 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase NMD_transcript_variant 83 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase synonymous_variant 12 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase non_coding_transcript_variant 18 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase non_coding_transcript_exon_variant 16 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase 3_prime_UTR_variant 69 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase 5_prime_UTR_variant 5 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase upstream_gene_variant 10 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase upstream_gene_variant 7 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase splice_region_variant 1 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase NMD_transcript_variant 5 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase intron_variant 6 chr5 76.91325 76.95158 6.037189 1.0000000
231327 ENSMUSG00000029246 Ppat phosphoribosyl pyrophosphate amidotransferase 5_prime_UTR_variant 10 chr5 76.91325 76.95158 6.037189 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B 5_prime_UTR_variant 14 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B non_coding_transcript_exon_variant 37 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B splice_region_variant 3 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B intron_variant 7 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B upstream_gene_variant 9 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B upstream_gene_variant 70 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B 3_prime_UTR_variant 2 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B downstream_gene_variant 8 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B downstream_gene_variant 2 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B non_coding_transcript_variant 37 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B stop_gained 2 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B synonymous_variant 36 chr5 77.31015 77.34932 7.924508 1.0000000
231329 ENSMUSG00000029250 Polr2b polymerase (RNA) II (DNA directed) polypeptide B 3_prime_UTR_variant 3 chr5 77.31015 77.34932 7.924508 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 3_prime_UTR_variant 18 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 upstream_gene_variant 2 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 intron_variant 12 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 downstream_gene_variant 4 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 5_prime_UTR_variant 3 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 splice_region_variant 1 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 synonymous_variant 6 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 missense_variant 6 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 downstream_gene_variant 22 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 non_coding_transcript_exon_variant 20 chr5 86.10929 86.17280 6.546319 1.0000000
231380 ENSMUSG00000035898 Uba6 ubiquitin-like modifier activating enzyme 6 non_coding_transcript_variant 21 chr5 86.10929 86.17280 6.546319 1.0000000
231382 ENSMUSG00000061259 Tmprss11d transmembrane protease, serine 11d 3_prime_UTR_variant 28 chr5 86.30222 86.37342 2.288943 1.0000000
231382 ENSMUSG00000061259 Tmprss11d transmembrane protease, serine 11d synonymous_variant 6 chr5 86.30222 86.37342 2.288943 1.0000000
231382 ENSMUSG00000061259 Tmprss11d transmembrane protease, serine 11d 5_prime_UTR_variant 4 chr5 86.30222 86.37342 2.288943 1.0000000
231382 ENSMUSG00000061259 Tmprss11d transmembrane protease, serine 11d upstream_gene_variant 2 chr5 86.30222 86.37342 2.288943 1.0000000
231382 ENSMUSG00000061259 Tmprss11d transmembrane protease, serine 11d intron_variant 2 chr5 86.30222 86.37342 2.288943 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 NMD_transcript_variant 68 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 non_coding_transcript_variant 67 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 synonymous_variant 6 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 missense_variant 3 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 intron_variant 33 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 downstream_gene_variant 36 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 5_prime_UTR_variant 6 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 upstream_gene_variant 32 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 non_coding_transcript_exon_variant 67 chr5 86.72891 86.83666 7.769306 1.0000000
231386 ENSMUSG00000035851 Ythdc1 YTH domain containing 1 3_prime_UTR_variant 29 chr5 86.72891 86.83666 7.769306 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 5_prime_UTR_variant 1 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 missense_variant 3 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 downstream_gene_variant 3 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 upstream_gene_variant 4 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 intron_variant 5 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 3_prime_UTR_variant 2 chr5 87.06593 87.09256 1.863059 1.0000000
231396 ENSMUSG00000070704 Ugt2b36 UDP glucuronosyltransferase 2 family, polypeptide B36 synonymous_variant 2 chr5 87.06593 87.09256 1.863059 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 3_prime_UTR_variant 16 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 downstream_gene_variant 19 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 non_coding_transcript_variant 3 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 upstream_gene_variant 5 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 synonymous_variant 5 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 5_prime_UTR_variant 3 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 non_coding_transcript_exon_variant 3 chr5 88.65945 88.67617 6.957243 1.0000000
231413 ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 intron_variant 3 chr5 88.65945 88.67617 6.957243 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 NMD_transcript_variant 36 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 splice_region_variant 1 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 5_prime_UTR_variant 2 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 upstream_gene_variant 14 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 3_prime_UTR_variant 6 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 downstream_gene_variant 22 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 missense_variant 27 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 non_coding_transcript_exon_variant 34 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 non_coding_transcript_variant 34 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 synonymous_variant 15 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 intron_variant 14 chr5 90.21472 90.22400 5.575720 1.0000000
231430 ENSMUSG00000035505 Cox18 cytochrome c oxidase assembly protein 18 upstream_gene_variant 49 chr5 90.21472 90.22400 5.575720 1.0000000
231440 ENSMUSG00000034981 Parm1 prostate androgen-regulated mucin-like protein 1 3_prime_UTR_variant 36 chr5 91.51762 91.62689 6.402091 1.0000000
231440 ENSMUSG00000034981 Parm1 prostate androgen-regulated mucin-like protein 1 missense_variant 6 chr5 91.51762 91.62689 6.402091 1.0000000
231440 ENSMUSG00000034981 Parm1 prostate androgen-regulated mucin-like protein 1 synonymous_variant 4 chr5 91.51762 91.62689 6.402091 1.0000000
231440 ENSMUSG00000034981 Parm1 prostate androgen-regulated mucin-like protein 1 5_prime_UTR_variant 5 chr5 91.51762 91.62689 6.402091 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like 3_prime_UTR_variant 16 chr5 83.27814 83.35519 3.989782 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like upstream_gene_variant 1 chr5 83.27814 83.35519 3.989782 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like 5_prime_UTR_variant 1 chr5 83.27814 83.35519 3.989782 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like synonymous_variant 5 chr5 83.27814 83.35519 3.989782 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like missense_variant 9 chr5 83.27814 83.35519 3.989782 1.0000000
243078 ENSMUSG00000049537 Tecrl trans-2,3-enoyl-CoA reductase-like intron_variant 2 chr5 83.27814 83.35519 3.989782 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f non_coding_transcript_exon_variant 44 chr5 86.52190 86.63242 2.495718 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f 3_prime_UTR_variant 13 chr5 86.52190 86.63242 2.495718 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f synonymous_variant 3 chr5 86.52190 86.63242 2.495718 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f intron_variant 44 chr5 86.52190 86.63242 2.495718 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f downstream_gene_variant 6 chr5 86.52190 86.63242 2.495718 1.0000000
243083 ENSMUSG00000048764 Tmprss11f transmembrane protease, serine 11f non_coding_transcript_variant 44 chr5 86.52190 86.63242 2.495718 1.0000000
243084 ENSMUSG00000054537 Tmprss11e transmembrane protease, serine 11e 3_prime_UTR_variant 48 chr5 86.70519 86.74581 3.498551 1.0000000
243084 ENSMUSG00000054537 Tmprss11e transmembrane protease, serine 11e missense_variant 3 chr5 86.70519 86.74581 3.498551 1.0000000
243084 ENSMUSG00000054537 Tmprss11e transmembrane protease, serine 11e synonymous_variant 7 chr5 86.70519 86.74581 3.498551 1.0000000
243084 ENSMUSG00000054537 Tmprss11e transmembrane protease, serine 11e intron_variant 2 chr5 86.70519 86.74581 3.498551 1.0000000
243085 ENSMUSG00000035811 Ugt2b35 UDP glucuronosyltransferase 2 family, polypeptide B35 downstream_gene_variant 13 chr5 87.00086 87.01327 2.059162 1.0000000
243085 ENSMUSG00000035811 Ugt2b35 UDP glucuronosyltransferase 2 family, polypeptide B35 splice_region_variant 1 chr5 87.00086 87.01327 2.059162 1.0000000
243085 ENSMUSG00000035811 Ugt2b35 UDP glucuronosyltransferase 2 family, polypeptide B35 missense_variant 4 chr5 87.00086 87.01327 2.059162 1.0000000
243085 ENSMUSG00000035811 Ugt2b35 UDP glucuronosyltransferase 2 family, polypeptide B35 synonymous_variant 6 chr5 87.00086 87.01327 2.059162 1.0000000
280662 ENSMUSG00000029369 Afm afamin splice_region_variant 1 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin synonymous_variant 10 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin intron_variant 24 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin 3_prime_UTR_variant 26 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin missense_variant 14 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin 5_prime_UTR_variant 9 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin downstream_gene_variant 4 chr5 90.51893 90.55354 2.059770 1.0000000
280662 ENSMUSG00000029369 Afm afamin upstream_gene_variant 1 chr5 90.51893 90.55354 2.059770 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 3_prime_UTR_variant 2 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 splice_region_variant 1 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 missense_variant 6 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 synonymous_variant 12 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 intron_variant 4 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 downstream_gene_variant 6 chr5 77.34924 77.40804 10.044863 1.0000000
29817 ENSMUSG00000036256 Igfbp7 insulin-like growth factor binding protein 7 3_prime_UTR_variant 5 chr5 77.34924 77.40804 10.044863 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 non_coding_transcript_exon_variant 191 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 5_prime_UTR_variant 43 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 upstream_gene_variant 48 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 NMD_transcript_variant 195 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 non_coding_transcript_variant 202 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 intron_variant 139 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 3_prime_UTR_variant 79 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 downstream_gene_variant 59 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 missense_variant 14 chr5 81.02014 81.82513 5.476637 1.0000000
319387 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 synonymous_variant 42 chr5 81.02014 81.82513 5.476637 1.0000000
319875 ENSMUSG00000035861 Tmprss11b transmembrane protease, serine 11B 5_prime_UTR_variant 1 chr5 86.65763 86.67636 2.467032 1.0000000
319875 ENSMUSG00000035861 Tmprss11b transmembrane protease, serine 11B 3_prime_UTR_variant 30 chr5 86.65763 86.67636 2.467032 1.0000000
319875 ENSMUSG00000035861 Tmprss11b transmembrane protease, serine 11B synonymous_variant 3 chr5 86.65763 86.67636 2.467032 1.0000000
319875 ENSMUSG00000035861 Tmprss11b transmembrane protease, serine 11B missense_variant 4 chr5 86.65763 86.67636 2.467032 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g missense_variant 3 chr5 86.48588 86.51860 2.835885 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g 5_prime_UTR_variant 6 chr5 86.48588 86.51860 2.835885 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g upstream_gene_variant 12 chr5 86.48588 86.51860 2.835885 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g synonymous_variant 6 chr5 86.48588 86.51860 2.835885 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g downstream_gene_variant 11 chr5 86.48588 86.51860 2.835885 1.0000000
320454 ENSMUSG00000079451 Tmprss11g transmembrane protease, serine 11g 3_prime_UTR_variant 47 chr5 86.48588 86.51860 2.835885 1.0000000
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin upstream_gene_variant 60 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin missense_variant 29 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin 3_prime_UTR_variant 62 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin downstream_gene_variant 70 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin 5_prime_UTR_variant 11 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin non_coding_transcript_variant 33 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin downstream_gene_variant 42 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin synonymous_variant 39 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin intron_variant 28 chr5 76.65768 76.87355 4.526203 0.9268244
320827 ENSMUSG00000036377 Cracd capping protein inhibiting regulator of actin non_coding_transcript_exon_variant 32 chr5 76.65768 76.87355 4.526203 0.9268244
330119 ENSMUSG00000043635 Adamts3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 missense_variant 10 chr5 89.67709 89.88333 3.846883 1.0000000
330119 ENSMUSG00000043635 Adamts3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 synonymous_variant 23 chr5 89.67709 89.88333 3.846883 1.0000000
330119 ENSMUSG00000043635 Adamts3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 5_prime_UTR_variant 1 chr5 89.67709 89.88333 3.846883 1.0000000
330119 ENSMUSG00000043635 Adamts3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 intron_variant 36 chr5 89.67709 89.88333 3.846883 1.0000000
330122 ENSMUSG00000029379 Cxcl3 chemokine (C-X-C motif) ligand 3 splice_region_variant 1 chr5 90.78610 90.78809 3.567004 1.0000000
330122 ENSMUSG00000029379 Cxcl3 chemokine (C-X-C motif) ligand 3 3_prime_UTR_variant 16 chr5 90.78610 90.78809 3.567004 1.0000000
330122 ENSMUSG00000029379 Cxcl3 chemokine (C-X-C motif) ligand 3 synonymous_variant 3 chr5 90.78610 90.78809 3.567004 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 5_prime_UTR_variant 10 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 upstream_gene_variant 6 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 non_coding_transcript_exon_variant 62 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 synonymous_variant 24 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 intron_variant 16 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 3_prime_UTR_variant 38 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 downstream_gene_variant 32 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 non_coding_transcript_variant 62 chr5 76.58870 76.64647 5.928933 1.0000000
381644 ENSMUSG00000036403 Cep135 centrosomal protein 135 missense_variant 6 chr5 76.58870 76.64647 5.928933 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 synonymous_variant 1 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 upstream_gene_variant 24 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 intron_variant 4 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 upstream_gene_variant 1 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 missense_variant 1 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 downstream_gene_variant 1 chr5 77.00405 77.01061 2.468474 1.0000000
384185 ENSMUSG00000063820 Arl9 ADP-ribosylation factor-like 9 synonymous_variant 2 chr5 77.00405 77.01061 2.468474 1.0000000
435845 ENSMUSG00000061184 Tmprss11c transmembrane protease, serine 11c missense_variant 1 chr5 86.23148 86.28931 2.465531 1.0000000
435845 ENSMUSG00000061184 Tmprss11c transmembrane protease, serine 11c synonymous_variant 5 chr5 86.23148 86.28931 2.465531 1.0000000
435845 ENSMUSG00000061184 Tmprss11c transmembrane protease, serine 11c 3_prime_UTR_variant 2 chr5 86.23148 86.28931 2.465531 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 3_prime_UTR_variant 30 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 5_prime_UTR_variant 10 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 missense_variant 1 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 synonymous_variant 14 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 downstream_gene_variant 9 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 upstream_gene_variant 2 chr5 88.56504 88.65139 6.092990 1.0000000
52822 ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 intron_variant 32 chr5 88.56504 88.65139 6.092990 1.0000000
53315 ENSMUSG00000029273 Sult1d1 sulfotransferase family 1D, member 1 3_prime_UTR_variant 2 chr5 87.55464 87.56903 4.495790 1.0000000
53315 ENSMUSG00000029273 Sult1d1 sulfotransferase family 1D, member 1 downstream_gene_variant 2 chr5 87.55464 87.56903 4.495790 1.0000000
53315 ENSMUSG00000029273 Sult1d1 sulfotransferase family 1D, member 1 5_prime_UTR_variant 7 chr5 87.55464 87.56903 4.495790 1.0000000
53315 ENSMUSG00000029273 Sult1d1 sulfotransferase family 1D, member 1 synonymous_variant 1 chr5 87.55464 87.56903 4.495790 1.0000000
53315 ENSMUSG00000029273 Sult1d1 sulfotransferase family 1D, member 1 upstream_gene_variant 1 chr5 87.55464 87.56903 4.495790 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 non_coding_transcript_exon_variant 5 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 5_prime_UTR_variant 12 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 non_coding_transcript_variant 5 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 upstream_gene_variant 5 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 3_prime_UTR_variant 50 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 intron_variant 24 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 synonymous_variant 25 chr5 88.88682 89.23965 6.256533 1.0000000
54403 ENSMUSG00000060961 Slc4a4 solute carrier family 4 (anion exchanger), member 4 downstream_gene_variant 32 chr5 88.88682 89.23965 6.256533 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 3_prime_UTR_variant 12 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 downstream_gene_variant 12 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 synonymous_variant 21 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 intron_variant 3 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 intron_variant 4 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 missense_variant 1 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 upstream_gene_variant 23 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 synonymous_variant 12 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 missense_variant 3 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 5_prime_UTR_variant 4 chr5 87.45949 87.48226 3.547209 1.0000000
552899 ENSMUSG00000029268 Ugt2a2 UDP glucuronosyltransferase 2 family, polypeptide A2 splice_region_variant 1 chr5 87.45949 87.48226 3.547209 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U missense_variant 2 chr5 76.33349 76.36379 3.663415 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U 3_prime_UTR_variant 2 chr5 76.33349 76.36379 3.663415 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U intron_variant 3 chr5 76.33349 76.36379 3.663415 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U synonymous_variant 2 chr5 76.33349 76.36379 3.663415 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U 5_prime_UTR_variant 2 chr5 76.33349 76.36379 3.663415 1.0000000
56183 ENSMUSG00000029236 Nmu neuromedin U downstream_gene_variant 4 chr5 76.33349 76.36379 3.663415 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 downstream_gene_variant 50 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 intron_variant 2 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 synonymous_variant 2 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 missense_variant 3 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 3_prime_UTR_variant 65 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 upstream_gene_variant 2 chr5 87.51334 87.53820 2.327242 1.0000000
56362 ENSMUSG00000029269 Sult1b1 sulfotransferase family 1B, member 1 5_prime_UTR_variant 3 chr5 87.51334 87.53820 2.327242 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 missense_variant 30 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 non_coding_transcript_exon_variant 77 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 synonymous_variant 27 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 upstream_gene_variant 74 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 downstream_gene_variant 10 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 upstream_gene_variant 20 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 intron_variant 27 chr5 77.29418 77.31008 5.327575 1.0000000
56412 ENSMUSG00000036285 Noa1 nitric oxide associated 1 non_coding_transcript_variant 77 chr5 77.29418 77.31008 5.327575 1.0000000
56744 ENSMUSG00000029373 Pf4 platelet factor 4 3_prime_UTR_variant 2 chr5 90.77244 90.77338 4.942698 1.0000000
56744 ENSMUSG00000029373 Pf4 platelet factor 4 upstream_gene_variant 14 chr5 90.77244 90.77338 4.942698 1.0000000
56744 ENSMUSG00000029373 Pf4 platelet factor 4 intron_variant 3 chr5 90.77244 90.77338 4.942698 1.0000000
56744 ENSMUSG00000029373 Pf4 platelet factor 4 synonymous_variant 2 chr5 90.77244 90.77338 4.942698 1.0000000
56744 ENSMUSG00000029373 Pf4 platelet factor 4 5_prime_UTR_variant 5 chr5 90.77244 90.77338 4.942698 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 5_prime_UTR_variant 13 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 upstream_gene_variant 26 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 non_coding_transcript_variant 52 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 synonymous_variant 5 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 non_coding_transcript_exon_variant 52 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 missense_variant 2 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 intron_variant 32 chr5 86.07175 86.10613 5.548088 1.0000000
56792 ENSMUSG00000029254 Stap1 signal transducing adaptor family member 1 downstream_gene_variant 32 chr5 86.07175 86.10613 5.548088 1.0000000
57349 ENSMUSG00000029372 Ppbp pro-platelet basic protein 5_prime_UTR_variant 1 chr5 90.76852 90.77006 6.424546 1.0000000
57349 ENSMUSG00000029372 Ppbp pro-platelet basic protein downstream_gene_variant 12 chr5 90.76852 90.77006 6.424546 1.0000000
57349 ENSMUSG00000029372 Ppbp pro-platelet basic protein synonymous_variant 2 chr5 90.76852 90.77006 6.424546 1.0000000
57349 ENSMUSG00000029372 Ppbp pro-platelet basic protein 3_prime_UTR_variant 11 chr5 90.76852 90.77006 6.424546 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 5_prime_UTR_variant 24 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 non_coding_transcript_exon_variant 135 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 splice_region_variant 6 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 3_prime_UTR_variant 36 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 intron_variant 82 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 non_coding_transcript_variant 150 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 synonymous_variant 18 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 upstream_gene_variant 72 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 downstream_gene_variant 121 chr5 76.14027 76.15550 6.832440 1.0000000
57357 ENSMUSG00000029233 Srd5a3 steroid 5 alpha-reductase 3 missense_variant 12 chr5 76.14027 76.15550 6.832440 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 splice_region_variant 3 chr5 90.56111 90.59787 2.549181 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 3_prime_UTR_variant 1 chr5 90.56111 90.59787 2.549181 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 upstream_gene_variant 2 chr5 90.56111 90.59787 2.549181 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 intron_variant 16 chr5 90.56111 90.59787 2.549181 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 synonymous_variant 6 chr5 90.56111 90.59787 2.549181 1.0000000
622307 ENSMUSG00000070690 Albfm1 albumin superfamily member 1 missense_variant 19 chr5 90.56111 90.59787 2.549181 1.0000000
639545 ENSMUSG00000091204 Gm7271 predicted gene 7271 upstream_gene_variant 5 chr5 76.48404 76.51665 2.654522 1.0000000
639545 ENSMUSG00000091204 Gm7271 predicted gene 7271 non_coding_transcript_exon_variant 13 chr5 76.48404 76.51665 2.654522 1.0000000
639545 ENSMUSG00000091204 Gm7271 predicted gene 7271 non_coding_transcript_variant 13 chr5 76.48404 76.51665 2.654522 1.0000000
654494 ENSMUSG00000067156 Gm7337 DAZ interacting protein 1 pseudogene non_coding_transcript_exon_variant 71 chr5 87.85036 87.85301 4.879604 1.0000000
654494 ENSMUSG00000067156 Gm7337 DAZ interacting protein 1 pseudogene downstream_gene_variant 31 chr5 87.85036 87.85301 4.879604 1.0000000
654494 ENSMUSG00000067156 Gm7337 DAZ interacting protein 1 pseudogene non_coding_transcript_variant 71 chr5 87.85036 87.85301 4.879604 1.0000000
654494 ENSMUSG00000067156 Gm7337 DAZ interacting protein 1 pseudogene upstream_gene_variant 2 chr5 87.85036 87.85301 4.879604 1.0000000
65961 ENSMUSG00000070697 Utp3 UTP3 small subunit processome component upstream_gene_variant 1 chr5 88.55446 88.55609 5.060114 1.0000000
65961 ENSMUSG00000070697 Utp3 UTP3 small subunit processome component missense_variant 2 chr5 88.55446 88.55609 5.060114 1.0000000
65961 ENSMUSG00000070697 Utp3 UTP3 small subunit processome component 5_prime_UTR_variant 1 chr5 88.55446 88.55609 5.060114 1.0000000
65961 ENSMUSG00000070697 Utp3 UTP3 small subunit processome component synonymous_variant 2 chr5 88.55446 88.55609 5.060114 1.0000000
665055 ENSMUSG00000098449 Gm7467 predicted gene 7467 non_coding_transcript_variant 11 chr5 76.30488 76.30553 3.447665 1.0000000
665055 ENSMUSG00000098449 Gm7467 predicted gene 7467 upstream_gene_variant 2 chr5 76.30488 76.30553 3.447665 1.0000000
665055 ENSMUSG00000098449 Gm7467 predicted gene 7467 non_coding_transcript_exon_variant 11 chr5 76.30488 76.30553 3.447665 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like missense_variant 7 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like upstream_gene_variant 1 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like intron_variant 67 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 5_prime_UTR_variant 1 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 3_prime_UTR_variant 20 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like synonymous_variant 14 chr5 90.93112 91.02137 5.591798 1.0000000
665563 ENSMUSG00000029376 Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like splice_region_variant 2 chr5 90.93112 91.02137 5.591798 1.0000000
665615 ENSMUSG00000090302 Gm7714 predicted gene 7714 missense_variant 3 chr5 88.26892 88.28284 3.602418 1.0000000
665615 ENSMUSG00000090302 Gm7714 predicted gene 7714 5_prime_UTR_variant 4 chr5 88.26892 88.28284 3.602418 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 synonymous_variant 18 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 splice_region_variant 1 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 downstream_gene_variant 1 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 upstream_gene_variant 39 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 missense_variant 5 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 intron_variant 42 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 non_coding_transcript_variant 89 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 3_prime_UTR_variant 30 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 non_coding_transcript_exon_variant 89 chr5 76.97468 76.99994 8.071574 1.0000000
66661 ENSMUSG00000036323 Srp72 signal recognition particle 72 downstream_gene_variant 82 chr5 76.97468 76.99994 8.071574 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 5_prime_UTR_variant 7 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase upstream_gene_variant 21 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase missense_variant 1 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase NMD_transcript_variant 10 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase splice_region_variant 2 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase synonymous_variant 9 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase downstream_gene_variant 22 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase non_coding_transcript_variant 4 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase intron_variant 7 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase intron_variant 2 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 5_prime_UTR_variant 8 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 3_prime_UTR_variant 18 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase upstream_gene_variant 12 chr5 76.95131 76.96751 6.369434 1.0000000
67054 ENSMUSG00000029247 Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase non_coding_transcript_exon_variant 4 chr5 76.95131 76.96751 6.369434 1.0000000
67327 ENSMUSG00000099863 1700031L13Rik RIKEN cDNA 1700031L13 gene downstream_gene_variant 9 chr5 82.12241 82.12471 2.243651 1.0000000
67327 ENSMUSG00000099863 1700031L13Rik RIKEN cDNA 1700031L13 gene intron_variant 2 chr5 82.12241 82.12471 2.243651 1.0000000
67327 ENSMUSG00000099863 1700031L13Rik RIKEN cDNA 1700031L13 gene non_coding_transcript_variant 27 chr5 82.12241 82.12471 2.243651 1.0000000
67327 ENSMUSG00000099863 1700031L13Rik RIKEN cDNA 1700031L13 gene non_coding_transcript_exon_variant 27 chr5 82.12241 82.12471 2.243651 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene non_coding_transcript_exon_variant 7 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene downstream_gene_variant 1 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene non_coding_transcript_variant 7 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene non_coding_transcript_variant 2 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene non_coding_transcript_exon_variant 1 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene non_coding_transcript_variant 5 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene intron_variant 5 chr5 77.00645 77.01886 2.802538 1.0000000
68246 ENSMUSG00000086632 1700112J05Rik RIKEN cDNA 1700112J05 gene intron_variant 1 chr5 77.00645 77.01886 2.802538 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B synonymous_variant 4 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B downstream_gene_variant 78 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B non_coding_transcript_variant 45 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B 3_prime_UTR_variant 55 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B non_coding_transcript_exon_variant 32 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B 5_prime_UTR_variant 3 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B downstream_gene_variant 5 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B upstream_gene_variant 3 chr5 88.72086 88.76422 6.975139 1.0000000
68473 ENSMUSG00000006262 Mob1b MOB kinase activator 1B intron_variant 38 chr5 88.72086 88.76422 6.975139 1.0000000
69592 ENSMUSG00000009580 Odam odontogenic, ameloblast asssociated downstream_gene_variant 17 chr5 87.88503 87.89417 2.189613 1.0000000
69592 ENSMUSG00000009580 Odam odontogenic, ameloblast asssociated missense_variant 5 chr5 87.88503 87.89417 2.189613 1.0000000
69592 ENSMUSG00000009580 Odam odontogenic, ameloblast asssociated 3_prime_UTR_variant 17 chr5 87.88503 87.89417 2.189613 1.0000000
69592 ENSMUSG00000009580 Odam odontogenic, ameloblast asssociated synonymous_variant 8 chr5 87.88503 87.89417 2.189613 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 missense_variant 2 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 3_prime_UTR_variant 48 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 non_coding_transcript_exon_variant 218 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 downstream_gene_variant 83 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 upstream_gene_variant 136 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 intron_variant 163 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 synonymous_variant 30 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 splice_region_variant 2 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 non_coding_transcript_variant 218 chr5 76.52931 76.57029 6.837025 1.0000000
69940 ENSMUSG00000036435 Exoc1 exocyst complex component 1 5_prime_UTR_variant 1 chr5 76.52931 76.57029 6.837025 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 synonymous_variant 3 chr5 77.20511 77.21147 2.710218 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 5_prime_UTR_variant 7 chr5 77.20511 77.21147 2.710218 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 missense_variant 3 chr5 77.20511 77.21147 2.710218 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 3_prime_UTR_variant 10 chr5 77.20511 77.21147 2.710218 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 intron_variant 1 chr5 77.20511 77.21147 2.710218 1.0000000
69982 ENSMUSG00000053030 Spink2 serine peptidase inhibitor, Kazal type 2 upstream_gene_variant 8 chr5 77.20511 77.21147 2.710218 1.0000000
70977 ENSMUSG00000007907 Cabs1 calcium binding protein, spermatid specific 1 missense_variant 4 chr5 87.97944 87.98154 3.139324 1.0000000
70977 ENSMUSG00000007907 Cabs1 calcium binding protein, spermatid specific 1 upstream_gene_variant 1 chr5 87.97944 87.98154 3.139324 1.0000000
70977 ENSMUSG00000007907 Cabs1 calcium binding protein, spermatid specific 1 synonymous_variant 5 chr5 87.97944 87.98154 3.139324 1.0000000
71421 ENSMUSG00000029282 Amtn amelotin 3_prime_UTR_variant 4 chr5 88.37611 88.38592 4.012269 1.0000000
71421 ENSMUSG00000029282 Amtn amelotin 5_prime_UTR_variant 1 chr5 88.37611 88.38592 4.012269 1.0000000
71421 ENSMUSG00000029282 Amtn amelotin missense_variant 3 chr5 88.37611 88.38592 4.012269 1.0000000
71421 ENSMUSG00000029282 Amtn amelotin synonymous_variant 4 chr5 88.37611 88.38592 4.012269 1.0000000
71421 ENSMUSG00000029282 Amtn amelotin splice_region_variant 1 chr5 88.37611 88.38592 4.012269 1.0000000
71773 ENSMUSG00000035836 Ugt2b1 UDP glucuronosyltransferase 2 family, polypeptide B1 synonymous_variant 4 chr5 86.91664 86.92653 2.590878 1.0000000
71773 ENSMUSG00000035836 Ugt2b1 UDP glucuronosyltransferase 2 family, polypeptide B1 missense_variant 2 chr5 86.91664 86.92653 2.590878 1.0000000
71773 ENSMUSG00000035836 Ugt2b1 UDP glucuronosyltransferase 2 family, polypeptide B1 3_prime_UTR_variant 18 chr5 86.91664 86.92653 2.590878 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like 5_prime_UTR_variant 4 chr5 77.01602 77.06153 3.384552 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like missense_variant 8 chr5 77.01602 77.06153 3.384552 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like synonymous_variant 5 chr5 77.01602 77.06153 3.384552 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like 3_prime_UTR_variant 2 chr5 77.01602 77.06153 3.384552 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like intron_variant 2 chr5 77.01602 77.06153 3.384552 1.0000000
71868 ENSMUSG00000029248 Thegl theg spermatid protein like intron_variant 4 chr5 77.01602 77.06153 3.384552 1.0000000
71920 ENSMUSG00000035020 Epgn epithelial mitogen missense_variant 2 chr5 91.02746 91.03521 3.369517 1.0000000
71920 ENSMUSG00000035020 Epgn epithelial mitogen 3_prime_UTR_variant 29 chr5 91.02746 91.03521 3.369517 1.0000000
71920 ENSMUSG00000035020 Epgn epithelial mitogen intron_variant 1 chr5 91.02746 91.03521 3.369517 1.0000000
71920 ENSMUSG00000035020 Epgn epithelial mitogen synonymous_variant 15 chr5 91.02746 91.03521 3.369517 1.0000000
72094 ENSMUSG00000035780 Ugt2a3 UDP glucuronosyltransferase 2 family, polypeptide A3 missense_variant 2 chr5 87.32497 87.33719 2.416310 1.0000000
72094 ENSMUSG00000035780 Ugt2a3 UDP glucuronosyltransferase 2 family, polypeptide A3 synonymous_variant 7 chr5 87.32497 87.33719 2.416310 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 3_prime_UTR_variant 14 chr5 90.60308 90.64066 3.249511 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 synonymous_variant 2 chr5 90.60308 90.64066 3.249511 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 missense_variant 2 chr5 90.60308 90.64066 3.249511 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 intron_variant 5 chr5 90.60308 90.64066 3.249511 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 5_prime_UTR_variant 6 chr5 90.60308 90.64066 3.249511 1.0000000
73246 ENSMUSG00000029370 Rassf6 Ras association (RalGDS/AF-6) domain family member 6 upstream_gene_variant 4 chr5 90.60308 90.64066 3.249511 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene splice_region_variant 1 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene non_coding_transcript_exon_variant 4 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene intron_variant 53 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene non_coding_transcript_variant 3 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene non_coding_transcript_variant 1 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene non_coding_transcript_variant 4 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene intron_variant 3 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene upstream_gene_variant 9 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene non_coding_transcript_variant 53 chr5 87.90858 87.97935 2.649730 1.0000000
73471 ENSMUSG00000099605 1700066N21Rik RIKEN cDNA 1700066N21 gene intron_variant 1 chr5 87.90858 87.97935 2.649730 1.0000000
73779 ENSMUSG00000002240 Prr27 proline rich 27 upstream_gene_variant 14 chr5 87.82569 87.84639 3.243173 0.2227974
73779 ENSMUSG00000002240 Prr27 proline rich 27 synonymous_variant 4 chr5 87.82569 87.84639 3.243173 0.2227974
73779 ENSMUSG00000002240 Prr27 proline rich 27 downstream_gene_variant 26 chr5 87.82569 87.84639 3.243173 0.2227974
73779 ENSMUSG00000002240 Prr27 proline rich 27 5_prime_UTR_variant 2 chr5 87.82569 87.84639 3.243173 0.2227974
73779 ENSMUSG00000002240 Prr27 proline rich 27 missense_variant 5 chr5 87.82569 87.84639 3.243173 0.2227974
74318 ENSMUSG00000059325 Hopx HOP homeobox intron_variant 5 chr5 77.08699 77.11512 7.682828 1.0000000
74318 ENSMUSG00000059325 Hopx HOP homeobox 3_prime_UTR_variant 16 chr5 77.08699 77.11512 7.682828 1.0000000
74318 ENSMUSG00000059325 Hopx HOP homeobox missense_variant 2 chr5 77.08699 77.11512 7.682828 1.0000000
74318 ENSMUSG00000059325 Hopx HOP homeobox synonymous_variant 4 chr5 77.08699 77.11512 7.682828 1.0000000
74318 ENSMUSG00000059325 Hopx HOP homeobox splice_region_variant 1 chr5 77.08699 77.11512 7.682828 1.0000000
74318 ENSMUSG00000059325 Hopx HOP homeobox 5_prime_UTR_variant 11 chr5 77.08699 77.11512 7.682828 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene non_coding_transcript_variant 3 chr5 76.33124 76.34189 3.025635 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene upstream_gene_variant 4 chr5 76.33124 76.34189 3.025635 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene non_coding_transcript_exon_variant 3 chr5 76.33124 76.34189 3.025635 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene non_coding_transcript_variant 3 chr5 76.33124 76.34189 3.025635 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene splice_region_variant 1 chr5 76.33124 76.34189 3.025635 1.0000000
74621 ENSMUSG00000087037 4930432L08Rik RIKEN cDNA 4930432L08 gene intron_variant 3 chr5 76.33124 76.34189 3.025635 1.0000000
791294 ENSMUSG00000054945 Gm9958 predicted gene 9958 upstream_gene_variant 2 chr5 90.36662 90.36849 3.513235 1.0000000
791294 ENSMUSG00000054945 Gm9958 predicted gene 9958 3_prime_UTR_variant 2 chr5 90.36662 90.36849 3.513235 1.0000000
791294 ENSMUSG00000054945 Gm9958 predicted gene 9958 missense_variant 2 chr5 90.36662 90.36849 3.513235 1.0000000
791294 ENSMUSG00000054945 Gm9958 predicted gene 9958 5_prime_UTR_variant 8 chr5 90.36662 90.36849 3.513235 1.0000000
791294 ENSMUSG00000054945 Gm9958 predicted gene 9958 upstream_gene_variant 20 chr5 90.36662 90.36849 3.513235 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 3_prime_UTR_variant 5 chr5 76.31212 76.33116 2.678439 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 upstream_gene_variant 2 chr5 76.31212 76.33116 2.678439 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 5_prime_UTR_variant 4 chr5 76.31212 76.33116 2.678439 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 missense_variant 2 chr5 76.31212 76.33116 2.678439 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 downstream_gene_variant 1 chr5 76.31212 76.33116 2.678439 1.0000000
79455 ENSMUSG00000029235 Pdcl2 phosducin-like 2 synonymous_variant 5 chr5 76.31212 76.33116 2.678439 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 downstream_gene_variant 1 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 upstream_gene_variant 14 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 missense_variant 2 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 intron_variant 14 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 synonymous_variant 16 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 downstream_gene_variant 26 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 3_prime_UTR_variant 24 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 upstream_gene_variant 8 chr5 90.22717 90.36658 6.313568 1.0000000
81702 ENSMUSG00000055204 Ankrd17 ankyrin repeat domain 17 5_prime_UTR_variant 4 chr5 90.22717 90.36658 6.313568 1.0000000
NA NA NA NA NA NA NA NA NA 1.785811 0.4067408

Lung Cxcl1: Chr 15

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
lung_cxcl5 15 25.75102 6.743733 20.75102 30.75102
lung_cxcl2 15 25.75102 6.607928 20.75102 30.75102
lung_cxcl1 15 25.75102 7.907527 19.16443 25.83097
lung_mmp8 15 25.75102 6.391997 20.75102 30.75102

The lung Cxcl1 QTL on Chr 15 is colocated with three other QTL for lung: lung Cxcl2, Cxcl5 & Mmp8.

These peaks have similar allele effects patterns and may be driven by the same genes.

Below is the association mapping plot for lung Cxcl1.

There are 8 unique genes in the QTL interval. We measured expression for 7 of these genes.

Plot a histogram of the correlations.

The correlations are distributed as expected. Plot the gene with the highest correlation vs. the phenotype, colored by DO generation.

Produce a list of genes with mean expression and correlation p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr bonf.p.value
17909 ENSMUSG00000022272 Myo10 myosin X 5_prime_UTR_variant 44 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X non_coding_transcript_exon_variant 39 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X non_coding_transcript_variant 39 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X upstream_gene_variant 3 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X 3_prime_UTR_variant 42 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X downstream_gene_variant 32 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X splice_region_variant 3 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X intron_variant 54 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X synonymous_variant 44 chr15 25.62252 25.81367 8.101273 0.0000000
17909 ENSMUSG00000022272 Myo10 myosin X missense_variant 6 chr15 25.62252 25.81367 8.101273 0.0000000
215654 ENSMUSG00000040452 Cdh12 cadherin 12 upstream_gene_variant 1 chr15 21.11013 21.58953 2.387870 0.0007485
215654 ENSMUSG00000040452 Cdh12 cadherin 12 5_prime_UTR_variant 1 chr15 21.11013 21.58953 2.387870 0.0007485
215654 ENSMUSG00000040452 Cdh12 cadherin 12 synonymous_variant 6 chr15 21.11013 21.58953 2.387870 0.0007485
215654 ENSMUSG00000040452 Cdh12 cadherin 12 stop_gained 1 chr15 21.11013 21.58953 2.387870 0.0007485
215654 ENSMUSG00000040452 Cdh12 cadherin 12 3_prime_UTR_variant 32 chr15 21.11013 21.58953 2.387870 0.0007485
215654 ENSMUSG00000040452 Cdh12 cadherin 12 missense_variant 1 chr15 21.11013 21.58953 2.387870 0.0007485
320865 ENSMUSG00000040420 Cdh18 cadherin 18 5_prime_UTR_variant 7 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 non_coding_transcript_exon_variant 28 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 non_coding_transcript_variant 28 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 upstream_gene_variant 6 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 intron_variant 14 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 missense_variant 1 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 splice_region_variant 1 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 synonymous_variant 15 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 downstream_gene_variant 8 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 3_prime_UTR_variant 5 chr15 22.54902 23.47442 3.265981 0.0000280
320865 ENSMUSG00000040420 Cdh18 cadherin 18 intron_variant 12 chr15 22.54902 23.47442 3.265981 0.0000280
545091 ENSMUSG00000021927 Hnrnpa1l2-ps2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 non_coding_transcript_exon_variant 12 chr15 22.71387 22.71483 4.720948 0.0255356
545091 ENSMUSG00000021927 Hnrnpa1l2-ps2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 non_coding_transcript_variant 12 chr15 22.71387 22.71483 4.720948 0.0255356
64833 ENSMUSG00000047565 Acot10 acyl-CoA thioesterase 10 3_prime_UTR_variant 1 chr15 20.66521 20.66675 2.245246 1.0000000
64833 ENSMUSG00000047565 Acot10 acyl-CoA thioesterase 10 5_prime_UTR_variant 1 chr15 20.66521 20.66675 2.245246 1.0000000
64833 ENSMUSG00000047565 Acot10 acyl-CoA thioesterase 10 synonymous_variant 1 chr15 20.66521 20.66675 2.245246 1.0000000
64833 ENSMUSG00000047565 Acot10 acyl-CoA thioesterase 10 missense_variant 4 chr15 20.66521 20.66675 2.245246 1.0000000
70350 ENSMUSG00000045763 Basp1 brain abundant, membrane attached signal protein 1 3_prime_UTR_variant 7 chr15 25.36328 25.41376 6.813955 0.0000000
70350 ENSMUSG00000045763 Basp1 brain abundant, membrane attached signal protein 1 missense_variant 4 chr15 25.36328 25.41376 6.813955 0.0000000
70350 ENSMUSG00000045763 Basp1 brain abundant, membrane attached signal protein 1 synonymous_variant 6 chr15 25.36328 25.41376 6.813955 0.0000000
70350 ENSMUSG00000045763 Basp1 brain abundant, membrane attached signal protein 1 upstream_gene_variant 4 chr15 25.36328 25.41376 6.813955 0.0000000
70350 ENSMUSG00000045763 Basp1 brain abundant, membrane attached signal protein 1 5_prime_UTR_variant 3 chr15 25.36328 25.41376 6.813955 0.0000000

Lung Necrosis Ratio: Chr 17

For each QTL peak with a LOD > 7.7, we searched for colocated QTL for other phenotypes with LOD >= 6.0.

Phenotype Chr Pos LOD CI low CI high
pct_wt_loss 17 34.24046 6.161746 29.24046 39.24046
lung_cxcl2 17 35.32792 7.008385 32.89530 41.96493
lung_cxcl1 17 35.32792 6.860699 33.60628 41.99147
necr_ratio 17 37.22030 7.921965 35.19377 41.96493

The lung necrosis ratio QTL on Chr 17 is colocated with three other QTL for lung: lung Cxcl1, Cxcl2, & % weight loss.

These peaks have similar allele effects patterns and may be driven by the same genes.

Below is the association mapping plot for lung necrosis ratio.

There are 166 unique genes in the QTL interval. We measured expression for 138 of these genes.

Plot a histogram of the correlations.

The correlations are oddly distributed. Plot the gene with the highest correlation vs. the phenotype, colored by DO generation.

Produce a list of genes with mean expression and correlation p-values.

## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:many mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
## 'select()' returned 1:1 mapping between keys and columns
entrez ensembl symbol genename consequence num_snps chr start end mean_expr bonf.p.value
100043300 ENSMUSG00000096345 Esp16 exocrine gland secreted peptide 16 3_prime_UTR_variant 2 chr17 39.53614 39.54085 1.652522 1.0000000
100124459 ENSMUSG00000077931 Mir877 microRNA 877 upstream_gene_variant 6 chr17 35.96073 35.96081 2.683884 1.0000000
100124459 ENSMUSG00000077931 Mir877 microRNA 877 non_coding_transcript_variant 1 chr17 35.96073 35.96081 2.683884 1.0000000
100124459 ENSMUSG00000077931 Mir877 microRNA 877 non_coding_transcript_exon_variant 1 chr17 35.96073 35.96081 2.683884 1.0000000
100124459 ENSMUSG00000077931 Mir877 microRNA 877 downstream_gene_variant 10 chr17 35.96073 35.96081 2.683884 1.0000000
100126765 ENSMUSG00000092322 Esp36 exocrine gland secreted peptide 36 3_prime_UTR_variant 1 chr17 38.41647 38.42018 2.426381 0.0091707
100126766 ENSMUSG00000093957 Esp3 exocrine gland secreted peptide 3 3_prime_UTR_variant 1 chr17 40.63208 40.63706 1.806255 0.6377882
100126774 ENSMUSG00000094024 Esp18 exocrine gland secreted peptide 18 3_prime_UTR_variant 5 chr17 39.40636 39.41099 3.641385 0.0004448
100126777 ENSMUSG00000095540 Esp4 exocrine gland secreted peptide 4 missense_variant 1 chr17 40.59859 40.60262 2.230970 0.0262394
100126778 ENSMUSG00000090747 Esp8 exocrine gland secreted peptide 8 missense_variant 3 chr17 40.52002 40.53042 2.367291 0.0250639
100126778 ENSMUSG00000090747 Esp8 exocrine gland secreted peptide 8 5_prime_UTR_variant 1 chr17 40.52002 40.53042 2.367291 0.0250639
100126779 ENSMUSG00000096697 Esp23 exocrine gland secreted peptide 23 5_prime_UTR_variant 3 chr17 39.07369 39.07704 3.502295 0.0216147
100316810 ENSMUSG00000084751 Mir1894 microRNA 1894 upstream_gene_variant 6 chr17 35.91789 35.91797 NA NA
100316810 ENSMUSG00000084751 Mir1894 microRNA 1894 upstream_gene_variant 2 chr17 35.91789 35.91797 NA NA
100529082 ENSMUSG00000079492 Gm11127 predicted gene 11127 missense_variant 7 chr17 36.05582 36.05837 6.945261 1.0000000
100529082 ENSMUSG00000079492 Gm11127 predicted gene 11127 synonymous_variant 1 chr17 36.05582 36.05837 6.945261 1.0000000
100529082 ENSMUSG00000079492 Gm11127 predicted gene 11127 missense_variant 6 chr17 36.05582 36.05837 6.945261 1.0000000
100529082 ENSMUSG00000079492 Gm11127 predicted gene 11127 synonymous_variant 2 chr17 36.05582 36.05837 6.945261 1.0000000
102465588 ENSMUSG00000098291 Mir6973a microRNA 6973a downstream_gene_variant 11 chr17 35.19497 35.19505 NA NA
102465588 ENSMUSG00000098291 Mir6973a microRNA 6973a non_coding_transcript_exon_variant 1 chr17 35.19497 35.19505 NA NA
102465588 ENSMUSG00000098291 Mir6973a microRNA 6973a non_coding_transcript_variant 1 chr17 35.19497 35.19505 NA NA
102465588 ENSMUSG00000098291 Mir6973a microRNA 6973a downstream_gene_variant 38 chr17 35.19497 35.19505 NA NA
102465588 ENSMUSG00000098291 Mir6973a microRNA 6973a upstream_gene_variant 2 chr17 35.19497 35.19505 NA NA
102465589 ENSMUSG00000098499 Mir6975 microRNA 6975 mature_miRNA_variant 1 chr17 35.24408 35.24413 NA NA
102465589 ENSMUSG00000098499 Mir6975 microRNA 6975 non_coding_transcript_exon_variant 2 chr17 35.24408 35.24413 NA NA
102465589 ENSMUSG00000098499 Mir6975 microRNA 6975 non_coding_transcript_variant 2 chr17 35.24408 35.24413 NA NA
102465589 ENSMUSG00000098499 Mir6975 microRNA 6975 upstream_gene_variant 14 chr17 35.24408 35.24413 NA NA
102465886 ENSMUSG00000098269 Mir8094 microRNA 8094 downstream_gene_variant 6 chr17 35.25129 35.25140 NA NA
102465886 ENSMUSG00000098269 Mir8094 microRNA 8094 upstream_gene_variant 2 chr17 35.25129 35.25140 NA NA
102466990 ENSMUSG00000099006 Mir6974 microRNA 6974 upstream_gene_variant 1 chr17 35.20448 35.20456 NA NA
102466990 ENSMUSG00000099006 Mir6974 microRNA 6974 downstream_gene_variant 24 chr17 35.20448 35.20456 NA NA
102466990 ENSMUSG00000099006 Mir6974 microRNA 6974 downstream_gene_variant 3 chr17 35.20448 35.20456 NA NA
102577428 ENSMUSG00000090897 Gm44501 predicted readthrough transcript, 44501 missense_variant 2 chr17 40.56151 40.57955 1.801908 1.0000000
102577428 ENSMUSG00000090897 Gm44501 predicted readthrough transcript, 44501 intron_variant 2 chr17 40.56151 40.57955 1.801908 1.0000000
102577428 ENSMUSG00000090897 Gm44501 predicted readthrough transcript, 44501 missense_variant 2 chr17 40.56151 40.57955 1.801908 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) synonymous_variant 3 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) downstream_gene_variant 4 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) splice_region_variant 3 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) upstream_gene_variant 21 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) 5_prime_UTR_variant 2 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) 3_prime_UTR_variant 3 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) downstream_gene_variant 22 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) upstream_gene_variant 2 chr17 35.86132 35.86540 5.453577 1.0000000
106582 ENSMUSG00000059791 Nrm nurim (nuclear envelope membrane protein) missense_variant 4 chr17 35.86132 35.86540 5.453577 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 downstream_gene_variant 12 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 downstream_gene_variant 6 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 splice_region_variant 2 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 missense_variant 3 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 intron_variant 4 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 upstream_gene_variant 4 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 3_prime_UTR_variant 9 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 upstream_gene_variant 44 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 5_prime_UTR_variant 10 chr17 35.51273 35.51682 5.782700 1.0000000
106795 ENSMUSG00000050410 Tcf19 transcription factor 19 synonymous_variant 12 chr17 35.51273 35.51682 5.782700 1.0000000
110557 ENSMUSG00000073409 H2-Q6 histocompatibility 2, Q region locus 6 missense_variant 2 chr17 35.42485 35.43006 7.954555 1.0000000
110557 ENSMUSG00000073409 H2-Q6 histocompatibility 2, Q region locus 6 upstream_gene_variant 1 chr17 35.42485 35.43006 7.954555 1.0000000
110557 ENSMUSG00000073409 H2-Q6 histocompatibility 2, Q region locus 6 5_prime_UTR_variant 1 chr17 35.42485 35.43006 7.954555 1.0000000
110557 ENSMUSG00000073409 H2-Q6 histocompatibility 2, Q region locus 6 downstream_gene_variant 1 chr17 35.42485 35.43006 7.954555 1.0000000
110557 ENSMUSG00000073409 H2-Q6 histocompatibility 2, Q region locus 6 3_prime_UTR_variant 1 chr17 35.42485 35.43006 7.954555 1.0000000
110558 ENSMUSG00000060550 H2-Q9 histocompatibility 2, Q region locus 9 upstream_gene_variant 1 chr17 35.43921 35.44377 NA NA
110558 ENSMUSG00000060550 H2-Q9 histocompatibility 2, Q region locus 9 non_coding_transcript_exon_variant 1 chr17 35.43921 35.44377 NA NA
110558 ENSMUSG00000060550 H2-Q9 histocompatibility 2, Q region locus 9 non_coding_transcript_variant 1 chr17 35.43921 35.44377 NA NA
110558 ENSMUSG00000060550 H2-Q9 histocompatibility 2, Q region locus 9 intron_variant 1 chr17 35.43921 35.44377 NA NA
110696 ENSMUSG00000058124 H2-M10.3 histocompatibility 2, M region locus 10.3 missense_variant 4 chr17 36.36500 36.36842 3.453284 0.1594535
110696 ENSMUSG00000058124 H2-M10.3 histocompatibility 2, M region locus 10.3 synonymous_variant 6 chr17 36.36500 36.36842 3.453284 0.1594535
110696 ENSMUSG00000058124 H2-M10.3 histocompatibility 2, M region locus 10.3 3_prime_UTR_variant 6 chr17 36.36500 36.36842 3.453284 0.1594535
11571 ENSMUSG00000025431 Crisp1 cysteine-rich secretory protein 1 synonymous_variant 1 chr17 40.29376 40.31921 2.782617 1.0000000
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 3_prime_UTR_variant 29 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 intron_variant 7 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 upstream_gene_variant 5 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 missense_variant 8 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 downstream_gene_variant 41 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 NMD_transcript_variant 32 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 5_prime_UTR_variant 8 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 splice_region_variant 1 chr17 35.68157 35.70462 5.569803 0.0030921
12305 ENSMUSG00000003534 Ddr1 discoidin domain receptor family, member 1 synonymous_variant 30 chr17 35.68157 35.70462 5.569803 0.0030921
14251 ENSMUSG00000059714 Flot1 flotillin 1 non_coding_transcript_exon_variant 23 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 upstream_gene_variant 7 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 upstream_gene_variant 11 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 3_prime_UTR_variant 3 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 NMD_transcript_variant 11 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 downstream_gene_variant 25 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 splice_region_variant 2 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 intron_variant 12 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 non_coding_transcript_variant 26 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 synonymous_variant 12 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 downstream_gene_variant 20 chr17 35.82323 35.83279 6.933524 0.0065458
14251 ENSMUSG00000059714 Flot1 flotillin 1 5_prime_UTR_variant 8 chr17 35.82323 35.83279 6.933524 0.0065458
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 5_prime_UTR_variant 4 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 downstream_gene_variant 2 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 non_coding_transcript_variant 2 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 3_prime_UTR_variant 11 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 synonymous_variant 7 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 non_coding_transcript_exon_variant 2 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 missense_variant 1 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 upstream_gene_variant 4 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 upstream_gene_variant 29 chr17 35.97985 35.98946 5.504536 1.0000000
14670 ENSMUSG00000024429 Gnl1 guanine nucleotide binding protein-like 1 5_prime_UTR_variant 4 chr17 35.97985 35.98946 5.504536 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 downstream_gene_variant 33 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 missense_variant 4 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 5_prime_UTR_variant 8 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 downstream_gene_variant 34 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 non_coding_transcript_exon_variant 46 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 NMD_transcript_variant 48 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 synonymous_variant 19 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 non_coding_transcript_variant 47 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 upstream_gene_variant 36 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 splice_region_variant 1 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 3_prime_UTR_variant 13 chr17 35.66773 35.67374 4.509064 1.0000000
14885 ENSMUSG00000001524 Gtf2h4 general transcription factor II H, polypeptide 4 intron_variant 20 chr17 35.66773 35.67374 4.509064 1.0000000
14963 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst upstream_gene_variant 4 chr17 36.08011 36.08422 NA NA
14963 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst missense_variant 4 chr17 36.08011 36.08422 NA NA
14963 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst intron_variant 4 chr17 36.08011 36.08422 NA NA
14963 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst NMD_transcript_variant 4 chr17 36.08011 36.08422 NA NA
14963 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst 3_prime_UTR_variant 4 chr17 36.08011 36.08422 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 non_coding_transcript_variant 1 chr17 35.26273 35.26750 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 missense_variant 1 chr17 35.26273 35.26750 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 non_coding_transcript_variant 1 chr17 35.26273 35.26750 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 non_coding_transcript_exon_variant 1 chr17 35.26273 35.26750 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 non_coding_transcript_exon_variant 1 chr17 35.26273 35.26750 NA NA
14964 ENSMUSG00000073411 H2-D1 histocompatibility 2, D region locus 1 missense_variant 1 chr17 35.26273 35.26750 NA NA
14985 ENSMUSG00000024448 H2-M10.1 histocompatibility 2, M region locus 10.1 3_prime_UTR_variant 2 chr17 36.32286 36.32615 4.417867 0.2128860
14985 ENSMUSG00000024448 H2-M10.1 histocompatibility 2, M region locus 10.1 synonymous_variant 7 chr17 36.32286 36.32615 4.417867 0.2128860
14985 ENSMUSG00000024448 H2-M10.1 histocompatibility 2, M region locus 10.1 missense_variant 4 chr17 36.32286 36.32615 4.417867 0.2128860
14985 ENSMUSG00000024448 H2-M10.1 histocompatibility 2, M region locus 10.1 splice_region_variant 1 chr17 36.32286 36.32615 4.417867 0.2128860
14985 ENSMUSG00000024448 H2-M10.1 histocompatibility 2, M region locus 10.1 downstream_gene_variant 2 chr17 36.32286 36.32615 4.417867 0.2128860
14990 ENSMUSG00000016283 H2-M2 histocompatibility 2, M region locus 2 stop_gained 1 chr17 37.48085 37.48355 7.964009 0.0024458
14990 ENSMUSG00000016283 H2-M2 histocompatibility 2, M region locus 2 synonymous_variant 2 chr17 37.48085 37.48355 7.964009 0.0024458
14990 ENSMUSG00000016283 H2-M2 histocompatibility 2, M region locus 2 missense_variant 2 chr17 37.48085 37.48355 7.964009 0.0024458
14990 ENSMUSG00000016283 H2-M2 histocompatibility 2, M region locus 2 splice_region_variant 2 chr17 37.48085 37.48355 7.964009 0.0024458
14991 ENSMUSG00000016206 H2-M3 histocompatibility 2, M region locus 3 missense_variant 6 chr17 37.27022 37.27448 7.392004 1.0000000
14991 ENSMUSG00000016206 H2-M3 histocompatibility 2, M region locus 3 3_prime_UTR_variant 3 chr17 37.27022 37.27448 7.392004 1.0000000
14991 ENSMUSG00000016206 H2-M3 histocompatibility 2, M region locus 3 synonymous_variant 9 chr17 37.27022 37.27448 7.392004 1.0000000
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 downstream_gene_variant 1 chr17 36.63929 36.64267 2.731606 0.0613346
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 3_prime_UTR_variant 1 chr17 36.63929 36.64267 2.731606 0.0613346
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 splice_region_variant 1 chr17 36.63929 36.64267 2.731606 0.0613346
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 synonymous_variant 4 chr17 36.63929 36.64267 2.731606 0.0613346
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 intron_variant 3 chr17 36.63929 36.64267 2.731606 0.0613346
14997 ENSMUSG00000067201 H2-M9 histocompatibility 2, M region locus 9 missense_variant 6 chr17 36.63929 36.64267 2.731606 0.0613346
15006 ENSMUSG00000079507 H2-Q1 histocompatibility 2, Q region locus 1 non_coding_transcript_exon_variant 20 chr17 35.32041 35.32510 4.736061 1.0000000
15006 ENSMUSG00000079507 H2-Q1 histocompatibility 2, Q region locus 1 non_coding_transcript_variant 20 chr17 35.32041 35.32510 4.736061 1.0000000
15006 ENSMUSG00000079507 H2-Q1 histocompatibility 2, Q region locus 1 missense_variant 6 chr17 35.32041 35.32510 4.736061 1.0000000
15006 ENSMUSG00000079507 H2-Q1 histocompatibility 2, Q region locus 1 intron_variant 10 chr17 35.32041 35.32510 4.736061 1.0000000
15006 ENSMUSG00000079507 H2-Q1 histocompatibility 2, Q region locus 1 3_prime_UTR_variant 8 chr17 35.32041 35.32510 4.736061 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 synonymous_variant 17 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 splice_region_variant 5 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 non_coding_transcript_variant 99 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 intron_variant 29 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 non_coding_transcript_exon_variant 99 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 3_prime_UTR_variant 32 chr17 35.47009 35.47456 3.777605 1.0000000
15007 ENSMUSG00000067235 H2-Q10 histocompatibility 2, Q region locus 10 missense_variant 29 chr17 35.47009 35.47456 3.777605 1.0000000
15013 ENSMUSG00000091705 H2-Q2 histocompatibility 2, Q region locus 2 3_prime_UTR_variant 7 chr17 35.34224 35.34676 NA NA
15013 ENSMUSG00000091705 H2-Q2 histocompatibility 2, Q region locus 2 synonymous_variant 1 chr17 35.34224 35.34676 NA NA
15013 ENSMUSG00000091705 H2-Q2 histocompatibility 2, Q region locus 2 missense_variant 2 chr17 35.34224 35.34676 NA NA
15013 ENSMUSG00000091705 H2-Q2 histocompatibility 2, Q region locus 2 downstream_gene_variant 7 chr17 35.34224 35.34676 NA NA
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 downstream_gene_variant 1 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 non_coding_transcript_exon_variant 14 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 3_prime_UTR_variant 4 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 non_coding_transcript_variant 14 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 5_prime_UTR_variant 1 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 missense_variant 5 chr17 35.37962 35.38529 6.899890 1.0000000
15015 ENSMUSG00000035929 H2-Q4 histocompatibility 2, Q region locus 4 synonymous_variant 5 chr17 35.37962 35.38529 6.899890 1.0000000
15018 ENSMUSG00000060550 H2-Q7 histocompatibility 2, Q region locus 7 non_coding_transcript_exon_variant 1 chr17 35.43915 35.44377 NA NA
15018 ENSMUSG00000060550 H2-Q7 histocompatibility 2, Q region locus 7 intron_variant 1 chr17 35.43915 35.44377 NA NA
15018 ENSMUSG00000060550 H2-Q7 histocompatibility 2, Q region locus 7 non_coding_transcript_variant 1 chr17 35.43915 35.44377 NA NA
15018 ENSMUSG00000060550 H2-Q7 histocompatibility 2, Q region locus 7 upstream_gene_variant 1 chr17 35.43915 35.44377 NA NA
15024 ENSMUSG00000079491 H2-T10 histocompatibility 2, T region locus 10 non_coding_transcript_exon_variant 3 chr17 36.11588 36.12147 3.246930 1.0000000
15024 ENSMUSG00000079491 H2-T10 histocompatibility 2, T region locus 10 intron_variant 1 chr17 36.11588 36.12147 3.246930 1.0000000
15024 ENSMUSG00000079491 H2-T10 histocompatibility 2, T region locus 10 non_coding_transcript_variant 3 chr17 36.11588 36.12147 3.246930 1.0000000
15024 ENSMUSG00000079491 H2-T10 histocompatibility 2, T region locus 10 3_prime_UTR_variant 2 chr17 36.11588 36.12147 3.246930 1.0000000
15024 ENSMUSG00000079491 H2-T10 histocompatibility 2, T region locus 10 missense_variant 2 chr17 36.11588 36.12147 3.246930 1.0000000
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 intron_variant 3 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 stop_gained 1 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 downstream_gene_variant 14 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 missense_variant 6 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 5_prime_UTR_variant 3 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 non_coding_transcript_exon_variant 14 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 NMD_transcript_variant 19 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 non_coding_transcript_variant 14 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 downstream_gene_variant 16 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 upstream_gene_variant 17 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 non_coding_transcript_exon_variant 35 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 3_prime_UTR_variant 12 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 synonymous_variant 3 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 downstream_gene_variant 60 chr17 36.03713 36.04275 NA NA
15039 ENSMUSG00000056116 H2-T22 histocompatibility 2, T region locus 22 non_coding_transcript_variant 35 chr17 36.03713 36.04275 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 intron_variant 76 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 upstream_gene_variant 7 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 splice_region_variant 7 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 non_coding_transcript_exon_variant 200 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 5_prime_UTR_variant 4 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 missense_variant 60 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 synonymous_variant 42 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 non_coding_transcript_variant 200 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 downstream_gene_variant 97 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 3_prime_UTR_variant 19 chr17 36.02977 36.03285 NA NA
15040 ENSMUSG00000067212 H2-T23 histocompatibility 2, T region locus 23 upstream_gene_variant 2 chr17 36.02977 36.03285 NA NA
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 missense_variant 23 chr17 36.00570 36.02056 7.003082 1.0000000
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 downstream_gene_variant 13 chr17 36.00570 36.02056 7.003082 1.0000000
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 splice_region_variant 1 chr17 36.00570 36.02056 7.003082 1.0000000
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 intron_variant 23 chr17 36.00570 36.02056 7.003082 1.0000000
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 synonymous_variant 13 chr17 36.00570 36.02056 7.003082 1.0000000
15042 ENSMUSG00000053835 H2-T24 histocompatibility 2, T region locus 24 3_prime_UTR_variant 33 chr17 36.00570 36.02056 7.003082 1.0000000
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 intron_variant 31 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 missense_variant 16 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 NMD_transcript_variant 39 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 non_coding_transcript_exon_variant 39 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 non_coding_transcript_variant 39 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 synonymous_variant 9 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 3_prime_UTR_variant 39 chr17 36.18557 36.19029 6.209497 0.0094848
15043 ENSMUSG00000054128 H2-T3 histocompatibility 2, T region locus 3 downstream_gene_variant 16 chr17 36.18557 36.19029 6.209497 0.0094848
15937 ENSMUSG00000003541 Ier3 immediate early response 3 synonymous_variant 2 chr17 35.82168 35.82292 8.121604 0.8305349
15937 ENSMUSG00000003541 Ier3 immediate early response 3 downstream_gene_variant 11 chr17 35.82168 35.82292 8.121604 0.8305349
15937 ENSMUSG00000003541 Ier3 immediate early response 3 5_prime_UTR_variant 1 chr17 35.82168 35.82292 8.121604 0.8305349
15937 ENSMUSG00000003541 Ier3 immediate early response 3 missense_variant 1 chr17 35.82168 35.82292 8.121604 0.8305349
15937 ENSMUSG00000003541 Ier3 immediate early response 3 3_prime_UTR_variant 3 chr17 35.82168 35.82292 8.121604 0.8305349
16992 ENSMUSG00000024402 Lta lymphotoxin A downstream_gene_variant 25 chr17 35.20316 35.20535 3.629005 1.0000000
16992 ENSMUSG00000024402 Lta lymphotoxin A 3_prime_UTR_variant 1 chr17 35.20316 35.20535 3.629005 1.0000000
16992 ENSMUSG00000024402 Lta lymphotoxin A missense_variant 2 chr17 35.20316 35.20535 3.629005 1.0000000
16992 ENSMUSG00000024402 Lta lymphotoxin A synonymous_variant 1 chr17 35.20316 35.20535 3.629005 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B non_coding_transcript_exon_variant 40 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B missense_variant 14 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B 3_prime_UTR_variant 6 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B non_coding_transcript_variant 40 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B synonymous_variant 17 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B upstream_gene_variant 2 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B 5_prime_UTR_variant 12 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B non_coding_transcript_variant 1 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B intron_variant 1 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B intron_variant 5 chr17 35.19444 35.19632 7.555991 1.0000000
16994 ENSMUSG00000024399 Ltb lymphotoxin B downstream_gene_variant 15 chr17 35.19444 35.19632 7.555991 1.0000000
170648 ENSMUSG00000057443 Olfr138 olfactory receptor 138 downstream_gene_variant 1 chr17 38.27477 38.27571 NA NA
170648 ENSMUSG00000057443 Olfr138 olfactory receptor 138 stop_gained 1 chr17 38.27477 38.27571 NA NA
17441 ENSMUSG00000076439 Mog myelin oligodendrocyte glycoprotein downstream_gene_variant 28 chr17 37.01074 37.02340 4.051216 0.1134423
17441 ENSMUSG00000076439 Mog myelin oligodendrocyte glycoprotein synonymous_variant 1 chr17 37.01074 37.02340 4.051216 0.1134423
17441 ENSMUSG00000076439 Mog myelin oligodendrocyte glycoprotein missense_variant 1 chr17 37.01074 37.02340 4.051216 0.1134423
17441 ENSMUSG00000076439 Mog myelin oligodendrocyte glycoprotein 3_prime_UTR_variant 13 chr17 37.01074 37.02340 4.051216 0.1134423
17441 ENSMUSG00000076439 Mog myelin oligodendrocyte glycoprotein downstream_gene_variant 13 chr17 37.01074 37.02340 4.051216 0.1134423
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase intron_variant 6 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase synonymous_variant 10 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase intron_variant 4 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase missense_variant 1 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase 5_prime_UTR_variant 2 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase upstream_gene_variant 3 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase 3_prime_UTR_variant 44 chr17 40.93469 40.96199 6.672319 0.0000000
17850 ENSMUSG00000023921 Mmut methylmalonyl-Coenzyme A mutase 5_prime_UTR_variant 2 chr17 40.93469 40.96199 6.672319 0.0000000
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 synonymous_variant 4 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 intron_variant 3 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 upstream_gene_variant 62 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 non_coding_transcript_exon_variant 9 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 missense_variant 1 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 non_coding_transcript_variant 9 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 missense_variant 1 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 intron_variant 5 chr17 35.22017 35.23579 4.375774 0.0000727
18038 ENSMUSG00000042419 Nfkbil1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 5_prime_UTR_variant 1 chr17 35.22017 35.23579 4.375774 0.0000727
18663 ENSMUSG00000031233 Pgk2 phosphoglycerate kinase 2 missense_variant 3 chr17 40.20701 40.20864 2.503900 0.2641614
18663 ENSMUSG00000031233 Pgk2 phosphoglycerate kinase 2 3_prime_UTR_variant 1 chr17 40.20701 40.20864 2.503900 0.2641614
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 downstream_gene_variant 18 chr17 35.50602 35.51077 4.753728 1.0000000
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 intron_variant 7 chr17 35.50602 35.51077 4.753728 1.0000000
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 5_prime_UTR_variant 8 chr17 35.50602 35.51077 4.753728 1.0000000
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 upstream_gene_variant 8 chr17 35.50602 35.51077 4.753728 1.0000000
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 synonymous_variant 1 chr17 35.50602 35.51077 4.753728 1.0000000
18999 ENSMUSG00000024406 Pou5f1 POU domain, class 5, transcription factor 1 missense_variant 1 chr17 35.50602 35.51077 4.753728 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 3_prime_UTR_variant 40 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 intron_variant 14 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 downstream_gene_variant 16 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 synonymous_variant 7 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 upstream_gene_variant 17 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 non_coding_transcript_variant 35 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 downstream_gene_variant 48 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 non_coding_transcript_exon_variant 25 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 5_prime_UTR_variant 17 chr17 36.88160 36.89012 3.934068 1.0000000
195359 ENSMUSG00000073399 Trim40 tripartite motif-containing 40 missense_variant 5 chr17 36.88160 36.89012 3.934068 1.0000000
19743 ENSMUSG00000023926 Rhag Rhesus blood group-associated A glycoprotein 3_prime_UTR_variant 3 chr17 40.81113 40.84075 2.962647 0.1257592
19743 ENSMUSG00000023926 Rhag Rhesus blood group-associated A glycoprotein synonymous_variant 4 chr17 40.81113 40.84075 2.962647 0.1257592
19743 ENSMUSG00000023926 Rhag Rhesus blood group-associated A glycoprotein 5_prime_UTR_variant 2 chr17 40.81113 40.84075 2.962647 0.1257592
19743 ENSMUSG00000023926 Rhag Rhesus blood group-associated A glycoprotein upstream_gene_variant 1 chr17 40.81113 40.84075 2.962647 0.1257592
19743 ENSMUSG00000023926 Rhag Rhesus blood group-associated A glycoprotein missense_variant 6 chr17 40.81113 40.84075 2.962647 0.1257592
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 5_prime_UTR_variant 1 chr17 36.86957 36.87783 3.806713 0.0002576
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 downstream_gene_variant 42 chr17 36.86957 36.87783 3.806713 0.0002576
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 missense_variant 5 chr17 36.86957 36.87783 3.806713 0.0002576
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 synonymous_variant 8 chr17 36.86957 36.87783 3.806713 0.0002576
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 upstream_gene_variant 12 chr17 36.86957 36.87783 3.806713 0.0002576
19824 ENSMUSG00000073400 Trim10 tripartite motif-containing 10 3_prime_UTR_variant 6 chr17 36.86957 36.87783 3.806713 0.0002576
21926 ENSMUSG00000024401 Tnf tumor necrosis factor upstream_gene_variant 4 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor downstream_gene_variant 40 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor downstream_gene_variant 1 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor 3_prime_UTR_variant 13 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor 5_prime_UTR_variant 8 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor downstream_gene_variant 1 chr17 35.19938 35.20201 7.282764 0.0000002
21926 ENSMUSG00000024401 Tnf tumor necrosis factor synonymous_variant 4 chr17 35.19938 35.20201 7.282764 0.0000002
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 synonymous_variant 1 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 intron_variant 4 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 downstream_gene_variant 2 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 3_prime_UTR_variant 6 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 non_coding_transcript_variant 5 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 upstream_gene_variant 4 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 5_prime_UTR_variant 4 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 non_coding_transcript_exon_variant 1 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 NMD_transcript_variant 1 chr17 40.76402 40.80700 2.451533 1.0000000
22024 ENSMUSG00000023930 Crisp2 cysteine-rich secretory protein 2 upstream_gene_variant 5 chr17 40.76402 40.80700 2.451533 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I synonymous_variant 8 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I upstream_gene_variant 3 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I non_coding_transcript_variant 14 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I upstream_gene_variant 4 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I non_coding_transcript_exon_variant 14 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I intron_variant 6 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I downstream_gene_variant 19 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I downstream_gene_variant 19 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I 3_prime_UTR_variant 11 chr17 35.83392 35.83831 9.156726 1.0000000
22154 ENSMUSG00000001525 Tubb5 tubulin, beta 5 class I 5_prime_UTR_variant 8 chr17 35.83392 35.83831 9.156726 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 non_coding_transcript_variant 11 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 downstream_gene_variant 16 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 upstream_gene_variant 12 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 5_prime_UTR_variant 1 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 synonymous_variant 4 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 intron_variant 3 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 non_coding_transcript_exon_variant 11 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 downstream_gene_variant 1 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 3_prime_UTR_variant 7 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 upstream_gene_variant 12 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 missense_variant 5 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 upstream_gene_variant 1 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 NMD_transcript_variant 3 chr17 35.95682 35.96976 6.200157 1.0000000
224742 ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 intron_variant 1 chr17 35.95682 35.96976 6.200157 1.0000000
224753 ENSMUSG00000048231 H2-M10.4 histocompatibility 2, M region locus 10.4 splice_region_variant 1 chr17 36.45892 36.46233 2.092563 1.0000000
224753 ENSMUSG00000048231 H2-M10.4 histocompatibility 2, M region locus 10.4 missense_variant 7 chr17 36.45892 36.46233 2.092563 1.0000000
224753 ENSMUSG00000048231 H2-M10.4 histocompatibility 2, M region locus 10.4 downstream_gene_variant 1 chr17 36.45892 36.46233 2.092563 1.0000000
224753 ENSMUSG00000048231 H2-M10.4 histocompatibility 2, M region locus 10.4 synonymous_variant 6 chr17 36.45892 36.46233 2.092563 1.0000000
224753 ENSMUSG00000048231 H2-M10.4 histocompatibility 2, M region locus 10.4 3_prime_UTR_variant 1 chr17 36.45892 36.46233 2.092563 1.0000000
224754 ENSMUSG00000037537 H2-M11 histocompatibility 2, M region locus 11 missense_variant 7 chr17 36.54707 36.54925 2.397954 0.1354783
224754 ENSMUSG00000037537 H2-M11 histocompatibility 2, M region locus 11 synonymous_variant 6 chr17 36.54707 36.54925 2.397954 0.1354783
224756 ENSMUSG00000037334 H2-M1 histocompatibility 2, M region locus 1 synonymous_variant 9 chr17 36.67001 36.67222 2.607213 0.2380211
224756 ENSMUSG00000037334 H2-M1 histocompatibility 2, M region locus 1 missense_variant 11 chr17 36.67001 36.67222 2.607213 0.2380211
224761 ENSMUSG00000037246 H2-M10.5 histocompatibility 2, M region locus 10.5 splice_region_variant 1 chr17 36.77291 36.77623 2.434949 0.1934362
224761 ENSMUSG00000037246 H2-M10.5 histocompatibility 2, M region locus 10.5 synonymous_variant 5 chr17 36.77291 36.77623 2.434949 0.1934362
224761 ENSMUSG00000037246 H2-M10.5 histocompatibility 2, M region locus 10.5 3_prime_UTR_variant 12 chr17 36.77291 36.77623 2.434949 0.1934362
224761 ENSMUSG00000037246 H2-M10.5 histocompatibility 2, M region locus 10.5 missense_variant 8 chr17 36.77291 36.77623 2.434949 0.1934362
224762 ENSMUSG00000058063 Trim31 tripartite motif-containing 31 3_prime_UTR_variant 3 chr17 36.89812 36.91021 3.162820 0.0029135
224762 ENSMUSG00000058063 Trim31 tripartite motif-containing 31 5_prime_UTR_variant 7 chr17 36.89812 36.91021 3.162820 0.0029135
224762 ENSMUSG00000058063 Trim31 tripartite motif-containing 31 synonymous_variant 8 chr17 36.89812 36.91021 3.162820 0.0029135
224762 ENSMUSG00000058063 Trim31 tripartite motif-containing 31 missense_variant 3 chr17 36.89812 36.91021 3.162820 0.0029135
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 downstream_gene_variant 60 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 non_coding_transcript_exon_variant 140 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 downstream_gene_variant 116 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 missense_variant 2 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 non_coding_transcript_variant 140 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 5_prime_UTR_variant 10 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 synonymous_variant 38 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 3_prime_UTR_variant 35 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 intron_variant 113 chr17 36.83713 36.85940 6.533924 0.0366175
22670 ENSMUSG00000024457 Trim26 tripartite motif-containing 26 upstream_gene_variant 60 chr17 36.83713 36.85940 6.533924 0.0366175
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 downstream_gene_variant 60 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 3_prime_UTR_variant 4 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 non_coding_transcript_exon_variant 50 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 missense_variant 7 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 splice_region_variant 3 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 intron_variant 70 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 non_coding_transcript_variant 53 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 5_prime_UTR_variant 67 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 synonymous_variant 15 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 downstream_gene_variant 13 chr17 37.00116 37.01064 5.172439 1.0000000
22715 ENSMUSG00000036036 Zfp57 zinc finger protein 57 upstream_gene_variant 61 chr17 37.00116 37.01064 5.172439 1.0000000
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 upstream_gene_variant 34 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 synonymous_variant 26 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 intron_variant 46 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 non_coding_transcript_exon_variant 62 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 upstream_gene_variant 59 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 non_coding_transcript_variant 63 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 5_prime_UTR_variant 1 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 missense_variant 7 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 downstream_gene_variant 2 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 3_prime_UTR_variant 3 chr17 35.51710 35.53101 4.782821 0.0161789
240084 ENSMUSG00000040312 Cchcr1 coiled-coil alpha-helical rod protein 1 downstream_gene_variant 43 chr17 35.51710 35.53101 4.782821 0.0161789
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 3_prime_UTR_variant 21 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 downstream_gene_variant 5 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 upstream_gene_variant 8 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 missense_variant 8 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 downstream_gene_variant 6 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 upstream_gene_variant 3 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 synonymous_variant 9 chr17 35.84152 35.85967 5.526448 0.1823571
240087 ENSMUSG00000061607 Mdc1 mediator of DNA damage checkpoint 1 5_prime_UTR_variant 3 chr17 35.84152 35.85967 5.526448 0.1823571
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 missense_variant 13 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 intron_variant 10 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 non_coding_transcript_exon_variant 38 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 synonymous_variant 7 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 downstream_gene_variant 11 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 upstream_gene_variant 9 chr17 36.98406 36.98954 5.016815 0.0256662
240095 ENSMUSG00000024459 H2-M5 histocompatibility 2, M region locus 5 non_coding_transcript_variant 38 chr17 36.98406 36.98954 5.016815 0.0256662
24108 ENSMUSG00000035186 Ubd ubiquitin D downstream_gene_variant 18 chr17 37.19389 37.19609 6.361997 1.0000000
257889 ENSMUSG00000067186 Olfr132 olfactory receptor 132 missense_variant 1 chr17 38.13025 38.13119 2.499617 0.0112093
257908 ENSMUSG00000092413 Olfr115 olfactory receptor 115 missense_variant 4 chr17 37.60982 37.61075 3.066677 0.2173062
257908 ENSMUSG00000092413 Olfr115 olfactory receptor 115 intron_variant 2 chr17 37.60982 37.61075 3.066677 0.2173062
258051 ENSMUSG00000091601 Olfr93 olfactory receptor 93 synonymous_variant 9 chr17 37.15101 37.15205 4.843277 0.0029392
258051 ENSMUSG00000091601 Olfr93 olfactory receptor 93 missense_variant 4 chr17 37.15101 37.15205 4.843277 0.0029392
258051 ENSMUSG00000091601 Olfr93 olfactory receptor 93 5_prime_UTR_variant 2 chr17 37.15101 37.15205 4.843277 0.0029392
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 5_prime_UTR_variant 10 chr17 37.69656 37.70212 4.692556 0.0011860
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 missense_variant 4 chr17 37.69656 37.70212 4.692556 0.0011860
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 intron_variant 1 chr17 37.69656 37.70212 4.692556 0.0011860
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 synonymous_variant 5 chr17 37.69656 37.70212 4.692556 0.0011860
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 3_prime_UTR_variant 1 chr17 37.69656 37.70212 4.692556 0.0011860
258095 ENSMUSG00000059964 Olfr119 olfactory receptor 119 downstream_gene_variant 2 chr17 37.69656 37.70212 4.692556 0.0011860
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 5_prime_UTR_variant 100 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 downstream_gene_variant 23 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 non_coding_transcript_exon_variant 48 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 non_coding_transcript_variant 86 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 3_prime_UTR_variant 4 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 upstream_gene_variant 109 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 missense_variant 50 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 intron_variant 76 chr17 37.56167 37.56945 2.420844 1.0000000
258096 ENSMUSG00000051611 Olfr112 olfactory receptor 112 synonymous_variant 41 chr17 37.56167 37.56945 2.420844 1.0000000
258218 ENSMUSG00000091531 Olfr102 olfactory receptor 102 3_prime_UTR_variant 1 chr17 37.31341 37.31444 1.716622 0.0097401
258218 ENSMUSG00000091531 Olfr102 olfactory receptor 102 missense_variant 1 chr17 37.31341 37.31444 1.716622 0.0097401
258218 ENSMUSG00000091531 Olfr102 olfactory receptor 102 synonymous_variant 4 chr17 37.31341 37.31444 1.716622 0.0097401
258219 ENSMUSG00000043827 Olfr94 olfactory receptor 94 synonymous_variant 8 chr17 37.19671 37.19801 3.909441 0.0226176
258219 ENSMUSG00000043827 Olfr94 olfactory receptor 94 5_prime_UTR_variant 4 chr17 37.19671 37.19801 3.909441 0.0226176
258219 ENSMUSG00000043827 Olfr94 olfactory receptor 94 missense_variant 6 chr17 37.19671 37.19801 3.909441 0.0226176
258263 ENSMUSG00000095286 Olfr117 olfactory receptor 117 synonymous_variant 5 chr17 37.65938 37.66033 1.893991 1.0000000
258263 ENSMUSG00000095286 Olfr117 olfactory receptor 117 missense_variant 1 chr17 37.65938 37.66033 1.893991 1.0000000
258284 ENSMUSG00000062629 Olfr114 olfactory receptor 114 missense_variant 4 chr17 37.58938 37.59038 3.321474 0.0117388
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 missense_variant 7 chr17 37.76861 37.77375 3.071249 0.0039809
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 intron_variant 3 chr17 37.76861 37.77375 3.071249 0.0039809
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 downstream_gene_variant 12 chr17 37.76861 37.77375 3.071249 0.0039809
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 5_prime_UTR_variant 1 chr17 37.76861 37.77375 3.071249 0.0039809
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 synonymous_variant 9 chr17 37.76861 37.77375 3.071249 0.0039809
258285 ENSMUSG00000083947 Olfr122 olfactory receptor 122 upstream_gene_variant 4 chr17 37.76861 37.77375 3.071249 0.0039809
258287 ENSMUSG00000050613 Olfr125 olfactory receptor 125 3_prime_UTR_variant 2 chr17 37.83491 37.83603 1.664455 1.0000000
258287 ENSMUSG00000050613 Olfr125 olfactory receptor 125 missense_variant 5 chr17 37.83491 37.83603 1.664455 1.0000000
258287 ENSMUSG00000050613 Olfr125 olfactory receptor 125 synonymous_variant 1 chr17 37.83491 37.83603 1.664455 1.0000000
258324 ENSMUSG00000081724 Olfr129 olfactory receptor 129 downstream_gene_variant 2 chr17 38.05086 38.06008 2.432632 0.0020832
258325 ENSMUSG00000090894 Olfr110 olfactory receptor 110 missense_variant 4 chr17 37.49247 37.50021 3.143089 1.0000000
258329 ENSMUSG00000057801 Olfr135 olfactory receptor 135 missense_variant 2 chr17 38.20817 38.20925 NA NA
258374 ENSMUSG00000058114 Olfr127 olfactory receptor 127 synonymous_variant 1 chr17 37.90352 37.90462 NA NA
258374 ENSMUSG00000058114 Olfr127 olfactory receptor 127 missense_variant 2 chr17 37.90352 37.90462 NA NA
258374 ENSMUSG00000058114 Olfr127 olfactory receptor 127 3_prime_UTR_variant 2 chr17 37.90352 37.90462 NA NA
258374 ENSMUSG00000058114 Olfr127 olfactory receptor 127 5_prime_UTR_variant 1 chr17 37.90352 37.90462 NA NA
258448 ENSMUSG00000096477 Olfr92 olfactory receptor 92 missense_variant 5 chr17 37.11104 37.11198 2.542718 1.0000000
258448 ENSMUSG00000096477 Olfr92 olfactory receptor 92 synonymous_variant 11 chr17 37.11104 37.11198 2.542718 1.0000000
258457 ENSMUSG00000059687 Olfr108 olfactory receptor 108 missense_variant 7 chr17 37.44548 37.44652 3.268476 0.2432374
258457 ENSMUSG00000059687 Olfr108 olfactory receptor 108 synonymous_variant 11 chr17 37.44548 37.44652 3.268476 0.2432374
258469 ENSMUSG00000056600 Olfr90 olfactory receptor 90 missense_variant 7 chr17 37.08519 37.08624 2.037964 1.0000000
258469 ENSMUSG00000056600 Olfr90 olfactory receptor 90 synonymous_variant 10 chr17 37.08519 37.08624 2.037964 1.0000000
258470 ENSMUSG00000095377 Olfr91 olfactory receptor 91 synonymous_variant 13 chr17 37.09293 37.09387 3.561262 0.0035293
258470 ENSMUSG00000095377 Olfr91 olfactory receptor 91 missense_variant 6 chr17 37.09293 37.09387 3.561262 0.0035293
258481 ENSMUSG00000054940 Olfr137 olfactory receptor 137 missense_variant 2 chr17 38.30452 38.30546 3.051663 0.0269258
258503 ENSMUSG00000063660 Olfr98 olfactory receptor 98 missense_variant 1 chr17 37.26271 37.26375 3.251160 1.0000000
258503 ENSMUSG00000063660 Olfr98 olfactory receptor 98 5_prime_UTR_variant 1 chr17 37.26271 37.26375 3.251160 1.0000000
258504 ENSMUSG00000063188 Olfr107 olfactory receptor 107 synonymous_variant 2 chr17 37.40548 37.40651 2.247838 0.0001445
258504 ENSMUSG00000063188 Olfr107 olfactory receptor 107 missense_variant 3 chr17 37.40548 37.40651 2.247838 0.0001445
258505 ENSMUSG00000058802 Olfr97 olfactory receptor 97 synonymous_variant 3 chr17 37.23144 37.23237 NA NA
258505 ENSMUSG00000058802 Olfr97 olfactory receptor 97 missense_variant 1 chr17 37.23144 37.23237 NA NA
258506 ENSMUSG00000049561 Olfr95 olfactory receptor 95 synonymous_variant 1 chr17 37.20795 37.21308 3.440704 0.0000022
258506 ENSMUSG00000049561 Olfr95 olfactory receptor 95 downstream_gene_variant 6 chr17 37.20795 37.21308 3.440704 0.0000022
258507 ENSMUSG00000064121 Olfr96 olfactory receptor 96 3_prime_UTR_variant 1 chr17 37.22509 37.22614 4.220274 0.0010276
258507 ENSMUSG00000064121 Olfr96 olfactory receptor 96 synonymous_variant 4 chr17 37.22509 37.22614 4.220274 0.0010276
258507 ENSMUSG00000064121 Olfr96 olfactory receptor 96 missense_variant 2 chr17 37.22509 37.22614 4.220274 0.0010276
258508 ENSMUSG00000061972 Olfr99 olfactory receptor 99 synonymous_variant 5 chr17 37.27950 37.28042 3.458349 1.0000000
258508 ENSMUSG00000061972 Olfr99 olfactory receptor 99 missense_variant 1 chr17 37.27950 37.28042 3.458349 1.0000000
258622 ENSMUSG00000060017 Olfr121 olfactory receptor 121 intron_variant 4 chr17 37.74885 37.75317 1.877392 1.0000000
258622 ENSMUSG00000060017 Olfr121 olfactory receptor 121 missense_variant 2 chr17 37.74885 37.75317 1.877392 1.0000000
258622 ENSMUSG00000060017 Olfr121 olfactory receptor 121 synonymous_variant 4 chr17 37.74885 37.75317 1.877392 1.0000000
258623 ENSMUSG00000045202 Olfr123 olfactory receptor 123 missense_variant 1 chr17 37.79545 37.79637 2.417649 0.0028118
258623 ENSMUSG00000045202 Olfr123 olfactory receptor 123 synonymous_variant 3 chr17 37.79545 37.79637 2.417649 0.0028118
258624 ENSMUSG00000063994 Olfr120 olfactory receptor 120 missense_variant 2 chr17 37.72600 37.72699 2.992818 1.0000000
258624 ENSMUSG00000063994 Olfr120 olfactory receptor 120 synonymous_variant 12 chr17 37.72600 37.72699 2.992818 1.0000000
258625 ENSMUSG00000061336 Olfr116 olfactory receptor 116 missense_variant 1 chr17 37.62367 37.62463 4.236144 0.0077990
258625 ENSMUSG00000061336 Olfr116 olfactory receptor 116 synonymous_variant 1 chr17 37.62367 37.62463 4.236144 0.0077990
258803 ENSMUSG00000096840 Olfr136 olfactory receptor 136 missense_variant 1 chr17 38.33516 38.33610 2.189049 1.0000000
258828 ENSMUSG00000063240 Olfr133 olfactory receptor 133 downstream_gene_variant 2 chr17 38.14850 38.14959 NA NA
258828 ENSMUSG00000063240 Olfr133 olfactory receptor 133 synonymous_variant 3 chr17 38.14850 38.14959 NA NA
258830 ENSMUSG00000049618 Olfr103 olfactory receptor 103 synonymous_variant 1 chr17 37.33629 37.33723 5.466719 0.0000474
258831 ENSMUSG00000092077 Olfr101 olfactory receptor 101 synonymous_variant 4 chr17 37.29945 37.30048 3.006910 0.5978198
258831 ENSMUSG00000092077 Olfr101 olfactory receptor 101 3_prime_UTR_variant 1 chr17 37.29945 37.30048 3.006910 0.5978198
258831 ENSMUSG00000092077 Olfr101 olfactory receptor 101 missense_variant 2 chr17 37.29945 37.30048 3.006910 0.5978198
258832 ENSMUSG00000029184 Olfr109 olfactory receptor 109 synonymous_variant 4 chr17 37.46621 37.46715 3.325981 0.0089381
258867 ENSMUSG00000043312 Olfr131 olfactory receptor 131 synonymous_variant 1 chr17 38.08197 38.08300 3.120813 0.0038465
259064 ENSMUSG00000044985 Olfr124 olfactory receptor 124 3_prime_UTR_variant 1 chr17 37.80507 37.80619 2.652033 0.0010678
259064 ENSMUSG00000044985 Olfr124 olfactory receptor 124 synonymous_variant 5 chr17 37.80507 37.80619 2.652033 0.0010678
259064 ENSMUSG00000044985 Olfr124 olfactory receptor 124 missense_variant 1 chr17 37.80507 37.80619 2.652033 0.0010678
268949 ENSMUSG00000073408 Mucl3 mucin like 3 synonymous_variant 11 chr17 35.63575 35.64370 4.031655 0.0003758
268949 ENSMUSG00000073408 Mucl3 mucin like 3 missense_variant 8 chr17 35.63575 35.64370 4.031655 0.0003758
268949 ENSMUSG00000073408 Mucl3 mucin like 3 3_prime_UTR_variant 14 chr17 35.63575 35.64370 4.031655 0.0003758
333715 ENSMUSG00000023083 H2-M10.2 histocompatibility 2, M region locus 10.2 missense_variant 3 chr17 36.28423 36.28649 3.749664 0.0907137
333715 ENSMUSG00000023083 H2-M10.2 histocompatibility 2, M region locus 10.2 splice_region_variant 1 chr17 36.28423 36.28649 3.749664 0.0907137
333715 ENSMUSG00000023083 H2-M10.2 histocompatibility 2, M region locus 10.2 synonymous_variant 12 chr17 36.28423 36.28649 3.749664 0.0907137
383243 ENSMUSG00000059030 Olfr128 olfactory receptor 128 3_prime_UTR_variant 1 chr17 37.92351 37.92455 NA NA
383243 ENSMUSG00000059030 Olfr128 olfactory receptor 128 synonymous_variant 2 chr17 37.92351 37.92455 NA NA
383243 ENSMUSG00000059030 Olfr128 olfactory receptor 128 missense_variant 3 chr17 37.92351 37.92455 NA NA
386454 ENSMUSG00000036492 Rnf39 ring finger protein 39 upstream_gene_variant 2 chr17 36.94292 36.94799 6.062696 1.0000000
386454 ENSMUSG00000036492 Rnf39 ring finger protein 39 synonymous_variant 4 chr17 36.94292 36.94799 6.062696 1.0000000
386454 ENSMUSG00000036492 Rnf39 ring finger protein 39 downstream_gene_variant 2 chr17 36.94292 36.94799 6.062696 1.0000000
386454 ENSMUSG00000036492 Rnf39 ring finger protein 39 downstream_gene_variant 10 chr17 36.94292 36.94799 6.062696 1.0000000
386463 ENSMUSG00000039518 Cdsn corneodesmosin 5_prime_UTR_variant 1 chr17 35.55213 35.55718 4.143791 0.0027699
386463 ENSMUSG00000039518 Cdsn corneodesmosin missense_variant 8 chr17 35.55213 35.55718 4.143791 0.0027699
386463 ENSMUSG00000039518 Cdsn corneodesmosin 3_prime_UTR_variant 18 chr17 35.55213 35.55718 4.143791 0.0027699
386463 ENSMUSG00000039518 Cdsn corneodesmosin synonymous_variant 11 chr17 35.55213 35.55718 4.143791 0.0027699
399549 ENSMUSG00000037130 H2-M10.6 histocompatibility 2, M region locus 10.6 3_prime_UTR_variant 9 chr17 36.81217 36.81556 3.883213 0.0006979
399549 ENSMUSG00000037130 H2-M10.6 histocompatibility 2, M region locus 10.6 synonymous_variant 5 chr17 36.81217 36.81556 3.883213 0.0006979
399549 ENSMUSG00000037130 H2-M10.6 histocompatibility 2, M region locus 10.6 missense_variant 3 chr17 36.81217 36.81556 3.883213 0.0006979
404308 ENSMUSG00000080990 Olfr118 olfactory receptor 118 synonymous_variant 5 chr17 37.67202 37.67299 NA NA
404308 ENSMUSG00000080990 Olfr118 olfactory receptor 118 missense_variant 8 chr17 37.67202 37.67299 NA NA
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 downstream_gene_variant 2 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 missense_variant 7 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 intron_variant 14 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 intron_variant 33 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 synonymous_variant 6 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 non_coding_transcript_variant 33 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 3_prime_UTR_variant 11 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 5_prime_UTR_variant 11 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 non_coding_transcript_variant 34 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 upstream_gene_variant 3 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 non_coding_transcript_exon_variant 24 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 intron_variant 43 chr17 35.60155 35.65057 7.188960 0.0000000
433102 ENSMUSG00000090509 Sfta2 surfactant associated 2 non_coding_transcript_variant 43 chr17 35.60155 35.65057 7.188960 0.0000000
433107 ENSMUSG00000092043 Esp6 exocrine gland secreted peptide 6 3_prime_UTR_variant 2 chr17 40.56151 40.56563 2.703710 1.0000000
435528 ENSMUSG00000091043 Glyatl3 glycine-N-acyltransferase-like 3 missense_variant 2 chr17 40.90462 40.91435 2.146592 1.0000000
435528 ENSMUSG00000091043 Glyatl3 glycine-N-acyltransferase-like 3 synonymous_variant 4 chr17 40.90462 40.91435 2.146592 1.0000000
435528 ENSMUSG00000091043 Glyatl3 glycine-N-acyltransferase-like 3 downstream_gene_variant 2 chr17 40.90462 40.91435 2.146592 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 non_coding_transcript_exon_variant 4 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 downstream_gene_variant 11 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 upstream_gene_variant 1 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 synonymous_variant 7 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 non_coding_transcript_variant 4 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 3_prime_UTR_variant 2 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 5_prime_UTR_variant 2 chr17 35.91657 35.93228 6.053452 1.0000000
52040 ENSMUSG00000039220 Ppp1r10 protein phosphatase 1, regulatory subunit 10 upstream_gene_variant 8 chr17 35.91657 35.93228 6.053452 1.0000000
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b upstream_gene_variant 7 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b non_coding_transcript_exon_variant 11 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b downstream_gene_variant 11 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b intron_variant 3 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b 5_prime_UTR_variant 14 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b splice_region_variant 1 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b downstream_gene_variant 3 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b non_coding_transcript_variant 3 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b synonymous_variant 3 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b intron_variant 13 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b non_coding_transcript_variant 16 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b 3_prime_UTR_variant 6 chr17 35.24175 35.25371 8.062161 0.0118617
53817 ENSMUSG00000019432 Ddx39b DEAD box helicase 39b upstream_gene_variant 59 chr17 35.24175 35.25371 8.062161 0.0118617
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 3_prime_UTR_variant 44 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 non_coding_transcript_exon_variant 7 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 missense_variant 2 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 downstream_gene_variant 45 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 synonymous_variant 8 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 upstream_gene_variant 12 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 5_prime_UTR_variant 4 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 NMD_transcript_variant 48 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 non_coding_transcript_variant 17 chr17 37.04597 37.07507 6.014503 0.0000068
54393 ENSMUSG00000024462 Gabbr1 gamma-aminobutyric acid (GABA) B receptor, 1 intron_variant 13 chr17 37.04597 37.07507 6.014503 0.0000068
545205 ENSMUSG00000090675 Olfr111 olfactory receptor 111 synonymous_variant 2 chr17 37.52996 37.53100 4.197750 1.0000000
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 3_prime_UTR_variant 1 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 upstream_gene_variant 30 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 missense_variant 8 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 intron_variant 2 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 synonymous_variant 2 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 3_prime_UTR_variant 1 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 upstream_gene_variant 11 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 missense_variant 5 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 synonymous_variant 1 chr17 36.04296 36.05864 6.283675 0.9290392
547347 ENSMUSG00000073407 Gm6034 predicted gene 6034 5_prime_UTR_variant 13 chr17 36.04296 36.05864 6.283675 0.9290392
57390 ENSMUSG00000024409 Psors1c2 psoriasis susceptibility 1 candidate 2 (human) upstream_gene_variant 30 chr17 35.53320 35.53465 3.853168 0.0001213
57390 ENSMUSG00000024409 Psors1c2 psoriasis susceptibility 1 candidate 2 (human) 3_prime_UTR_variant 2 chr17 35.53320 35.53465 3.853168 0.0001213
619517 ENSMUSG00000073396 Esp1 exocrine gland secreted peptide 1 missense_variant 1 chr17 40.72712 40.73178 2.508848 1.0000000
619517 ENSMUSG00000073396 Esp1 exocrine gland secreted peptide 1 3_prime_UTR_variant 2 chr17 40.72712 40.73178 2.508848 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 missense_variant 1 chr17 36.10972 36.12942 2.673565 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 downstream_gene_variant 1 chr17 36.10972 36.12942 2.673565 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 intron_variant 1 chr17 36.10972 36.12942 2.673565 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 synonymous_variant 2 chr17 36.10972 36.12942 2.673565 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 3_prime_UTR_variant 1 chr17 36.10972 36.12942 2.673565 1.0000000
630294 ENSMUSG00000092243 Gm7030 predicted gene 7030 intron_variant 3 chr17 36.10972 36.12942 2.673565 1.0000000
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 non_coding_transcript_exon_variant 8 chr17 36.95436 36.95856 5.273202 0.0000079
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 downstream_gene_variant 3 chr17 36.95436 36.95856 5.273202 0.0000079
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 non_coding_transcript_variant 8 chr17 36.95436 36.95856 5.273202 0.0000079
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 synonymous_variant 4 chr17 36.95436 36.95856 5.273202 0.0000079
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 downstream_gene_variant 7 chr17 36.95436 36.95856 5.273202 0.0000079
66136 ENSMUSG00000036315 Znrd1 zinc ribbon domain containing 1 3_prime_UTR_variant 7 chr17 36.95436 36.95856 5.273202 0.0000079
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 missense_variant 2 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 5_prime_UTR_variant 4 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 5_prime_UTR_variant 1 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 non_coding_transcript_variant 2 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 upstream_gene_variant 7 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 upstream_gene_variant 2 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 intron_variant 35 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 intron_variant 2 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 downstream_gene_variant 24 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 downstream_gene_variant 14 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 synonymous_variant 6 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 non_coding_transcript_variant 66 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 non_coding_transcript_exon_variant 64 chr17 35.23366 35.23877 4.610757 1.0000000
66237 ENSMUSG00000024403 Atp6v1g2 ATPase, H+ transporting, lysosomal V1 subunit G2 3_prime_UTR_variant 24 chr17 35.23366 35.23877 4.610757 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 upstream_gene_variant 6 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 non_coding_transcript_exon_variant 8 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 synonymous_variant 1 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 downstream_gene_variant 13 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 missense_variant 13 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 non_coding_transcript_variant 8 chr17 36.16444 36.16854 3.363805 1.0000000
667977 ENSMUSG00000073402 Gm8909 predicted gene 8909 downstream_gene_variant 4 chr17 36.16444 36.16854 3.363805 1.0000000
668200 ENSMUSG00000095104 Esp15 exocrine gland secreted peptide 15 missense_variant 7 chr17 39.64095 39.64567 NA NA
668200 ENSMUSG00000095104 Esp15 exocrine gland secreted peptide 15 3_prime_UTR_variant 10 chr17 39.64095 39.64567 NA NA
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B downstream_gene_variant 21 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B missense_variant 3 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B upstream_gene_variant 6 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B non_coding_transcript_variant 11 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B upstream_gene_variant 2 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B downstream_gene_variant 8 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B intron_variant 11 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B 3_prime_UTR_variant 3 chr17 35.91038 35.91639 6.854664 1.0000000
66973 ENSMUSG00000024436 Mrps18b mitochondrial ribosomal protein S18B non_coding_transcript_exon_variant 11 chr17 35.91038 35.91639 6.854664 1.0000000
672682 ENSMUSG00000090588 Muc21 mucin 21 missense_variant 27 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 5_prime_UTR_variant 3 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 intron_variant 33 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 upstream_gene_variant 7 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 downstream_gene_variant 4 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 non_coding_transcript_exon_variant 8 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 downstream_gene_variant 1 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 upstream_gene_variant 1 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 synonymous_variant 12 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 3_prime_UTR_variant 1 chr17 35.61792 35.62664 2.544993 0.0000016
672682 ENSMUSG00000090588 Muc21 mucin 21 non_coding_transcript_variant 41 chr17 35.61792 35.62664 2.544993 0.0000016
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene non_coding_transcript_variant 13 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene non_coding_transcript_exon_variant 13 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene non_coding_transcript_variant 10 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene upstream_gene_variant 4 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene downstream_gene_variant 14 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene downstream_gene_variant 10 chr17 36.14502 36.16318 NA NA
675325 ENSMUSG00000038311 2410017I17Rik RIKEN cDNA 2410017I17 gene intron_variant 10 chr17 36.14502 36.16318 NA NA
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit 5_prime_UTR_variant 2 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit non_coding_transcript_exon_variant 17 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit 3_prime_UTR_variant 7 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit upstream_gene_variant 34 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit NMD_transcript_variant 18 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit non_coding_transcript_variant 17 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit upstream_gene_variant 9 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit missense_variant 4 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit synonymous_variant 6 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit intron_variant 7 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit downstream_gene_variant 5 chr17 36.25565 36.25807 4.562542 1.0000000
67676 ENSMUSG00000024446 Rpp21 ribonuclease P 21 subunit stop_gained 2 chr17 36.25565 36.25807 4.562542 1.0000000
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial non_coding_transcript_variant 170 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial missense_variant 36 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial synonymous_variant 36 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial intron_variant 19 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial 5_prime_UTR_variant 9 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial 3_prime_UTR_variant 115 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial non_coding_transcript_exon_variant 162 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial upstream_gene_variant 33 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial NMD_transcript_variant 97 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial splice_region_variant 3 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial upstream_gene_variant 77 chr17 35.65563 35.66759 5.152056 0.1022689
68915 ENSMUSG00000038838 Vars2 valyl-tRNA synthetase 2, mitochondrial downstream_gene_variant 155 chr17 35.65563 35.66759 5.152056 0.1022689
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 5_prime_UTR_variant 4 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 upstream_gene_variant 8 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 synonymous_variant 7 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 upstream_gene_variant 4 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 downstream_gene_variant 60 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 NMD_transcript_variant 28 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 3_prime_UTR_variant 62 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 intron_variant 10 chr17 36.86069 36.86721 3.543163 0.0002037
69097 ENSMUSG00000050747 Trim15 tripartite motif-containing 15 downstream_gene_variant 36 chr17 36.86069 36.86721 3.543163 0.0002037
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 downstream_gene_variant 44 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 splice_region_variant 1 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 3_prime_UTR_variant 11 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 synonymous_variant 18 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 non_coding_transcript_variant 27 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 missense_variant 5 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 upstream_gene_variant 32 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 upstream_gene_variant 24 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 downstream_gene_variant 17 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 intron_variant 23 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 non_coding_transcript_exon_variant 27 chr17 35.87982 35.89267 5.942349 0.0004062
69192 ENSMUSG00000024422 Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 NMD_transcript_variant 52 chr17 35.87982 35.89267 5.942349 0.0004062
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene 5_prime_UTR_variant 1 chr17 35.56745 35.56895 4.345803 0.0006172
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene synonymous_variant 7 chr17 35.56745 35.56895 4.345803 0.0006172
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene non_coding_transcript_variant 14 chr17 35.56745 35.56895 4.345803 0.0006172
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene 3_prime_UTR_variant 2 chr17 35.56745 35.56895 4.345803 0.0006172
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene missense_variant 4 chr17 35.56745 35.56895 4.345803 0.0006172
69542 ENSMUSG00000039269 2300002M23Rik RIKEN cDNA 2300002M23 gene non_coding_transcript_exon_variant 14 chr17 35.56745 35.56895 4.345803 0.0006172
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene stop_gained 3 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene splice_region_variant 3 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene upstream_gene_variant 40 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene 5_prime_UTR_variant 33 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene intron_variant 26 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene downstream_gene_variant 34 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene downstream_gene_variant 22 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene initiator_codon_variant 4 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene upstream_gene_variant 26 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene non_coding_transcript_variant 37 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene non_coding_transcript_exon_variant 31 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene missense_variant 8 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene 3_prime_UTR_variant 3 chr17 35.89268 35.89743 5.779212 0.0006910
69662 ENSMUSG00000050705 2310061I04Rik RIKEN cDNA 2310061I04 gene synonymous_variant 8 chr17 35.89268 35.89743 5.779212 0.0006910
71583 ENSMUSG00000054951 9130008F23Rik RIKEN cDNA 9130008F23 gene 3_prime_UTR_variant 19 chr17 40.87548 40.88056 3.607309 1.0000000
71583 ENSMUSG00000054951 9130008F23Rik RIKEN cDNA 9130008F23 gene missense_variant 5 chr17 40.87548 40.88056 3.607309 1.0000000
71583 ENSMUSG00000054951 9130008F23Rik RIKEN cDNA 9130008F23 gene stop_gained 2 chr17 40.87548 40.88056 3.607309 1.0000000
71583 ENSMUSG00000054951 9130008F23Rik RIKEN cDNA 9130008F23 gene synonymous_variant 2 chr17 40.87548 40.88056 3.607309 1.0000000
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 intron_variant 35 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 downstream_gene_variant 44 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 non_coding_transcript_exon_variant 41 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 upstream_gene_variant 8 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 upstream_gene_variant 33 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 missense_variant 9 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 NMD_transcript_variant 48 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 downstream_gene_variant 44 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 5_prime_UTR_variant 7 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 non_coding_transcript_variant 45 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 synonymous_variant 10 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 stop_gained 4 chr17 35.89760 35.91007 5.636433 0.0065058
73242 ENSMUSG00000024426 Atat1 alpha tubulin acetyltransferase 1 3_prime_UTR_variant 33 chr17 35.89760 35.91007 5.636433 0.0065058
73286 ENSMUSG00000092239 1700031A10Rik RIKEN cDNA 1700031A10 gene non_coding_transcript_exon_variant 8 chr17 36.92379 36.93343 3.295462 1.0000000
73286 ENSMUSG00000092239 1700031A10Rik RIKEN cDNA 1700031A10 gene non_coding_transcript_variant 8 chr17 36.92379 36.93343 3.295462 1.0000000
74601 ENSMUSG00000092171 4833427F10Rik RIKEN cDNA 4833427F10 gene non_coding_transcript_variant 6 chr17 35.77245 35.78069 3.930978 0.0031665
74601 ENSMUSG00000092171 4833427F10Rik RIKEN cDNA 4833427F10 gene non_coding_transcript_exon_variant 6 chr17 35.77245 35.78069 3.930978 0.0031665
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 non_coding_transcript_exon_variant 4 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 5_prime_UTR_variant 4 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 splice_region_variant 3 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 intron_variant 12 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 non_coding_transcript_variant 5 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 missense_variant 1 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 synonymous_variant 2 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 upstream_gene_variant 8 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 downstream_gene_variant 3 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 3_prime_UTR_variant 12 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 5_prime_UTR_variant 25 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 upstream_gene_variant 24 chr17 35.97254 35.98024 4.346149 1.0000000
75210 ENSMUSG00000038500 Prr3 proline-rich polypeptide 3 downstream_gene_variant 17 chr17 35.97254 35.98024 4.346149 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense non_coding_transcript_variant 3 chr17 36.95859 36.96563 3.956803 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense 5_prime_UTR_variant 2 chr17 36.95859 36.96563 3.956803 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense missense_variant 6 chr17 36.95859 36.96563 3.956803 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense downstream_gene_variant 6 chr17 36.95859 36.96563 3.956803 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense intron_variant 3 chr17 36.95859 36.96563 3.956803 1.0000000
76416 ENSMUSG00000036214 Znrd1as zinc ribbon domain containing 1, antisense upstream_gene_variant 11 chr17 36.95859 36.96563 3.956803 1.0000000
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 downstream_gene_variant 2 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 upstream_gene_variant 9 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 splice_region_variant 2 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 upstream_gene_variant 18 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 missense_variant 8 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 downstream_gene_variant 4 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 5_prime_UTR_variant 10 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 synonymous_variant 10 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 intron_variant 13 chr17 35.86559 35.87560 6.320948 0.0005781
76448 ENSMUSG00000034595 Ppp1r18 protein phosphatase 1, regulatory subunit 18 3_prime_UTR_variant 33 chr17 35.86559 35.87560 6.320948 0.0005781
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 missense_variant 3 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 3_prime_UTR_variant 3 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 5_prime_UTR_variant 4 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 upstream_gene_variant 7 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 intron_variant 4 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 downstream_gene_variant 2 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 upstream_gene_variant 4 chr17 36.94836 36.95174 6.016991 0.0001825
76497 ENSMUSG00000036398 Ppp1r11 protein phosphatase 1, regulatory inhibitor subunit 11 downstream_gene_variant 3 chr17 36.94836 36.95174 6.016991 0.0001825
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene 3_prime_UTR_variant 8 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene missense_variant 7 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene downstream_gene_variant 2 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene upstream_gene_variant 11 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene synonymous_variant 3 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene intron_variant 1 chr17 36.97770 36.98124 2.771169 0.3931872
76797 ENSMUSG00000064308 2410137M14Rik RIKEN cDNA 2410137M14 gene splice_region_variant 1 chr17 36.97770 36.98124 2.771169 0.3931872
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 downstream_gene_variant 20 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 missense_variant 3 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 splice_region_variant 1 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 downstream_gene_variant 32 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 5_prime_UTR_variant 20 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 synonymous_variant 14 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 non_coding_transcript_variant 74 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 upstream_gene_variant 53 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 intron_variant 53 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 NMD_transcript_variant 53 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 3_prime_UTR_variant 39 chr17 36.25887 36.27225 5.073831 0.0384167
79263 ENSMUSG00000045409 Trim39 tripartite motif-containing 39 non_coding_transcript_exon_variant 73 chr17 36.25887 36.27225 5.073831 0.0384167
83815 ENSMUSG00000023919 Cenpq centromere protein Q upstream_gene_variant 1 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q 5_prime_UTR_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q 5_prime_UTR_variant 9 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q non_coding_transcript_exon_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q non_coding_transcript_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q missense_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q upstream_gene_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q intron_variant 2 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q downstream_gene_variant 1 chr17 40.92305 40.93505 3.851138 0.8183884
83815 ENSMUSG00000023919 Cenpq centromere protein Q 3_prime_UTR_variant 1 chr17 40.92305 40.93505 3.851138 0.8183884 
## R version 4.0.5 (2021-03-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] qtl2_0.24                                
##  [2] Mus.musculus_1.3.1                       
##  [3] TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0
##  [4] org.Mm.eg.db_3.12.0                      
##  [5] GO.db_3.12.1                             
##  [6] OrganismDbi_1.32.0                       
##  [7] GenomicFeatures_1.42.3                   
##  [8] GenomicRanges_1.42.0                     
##  [9] GenomeInfoDb_1.26.7                      
## [10] AnnotationDbi_1.52.0                     
## [11] IRanges_2.24.1                           
## [12] S4Vectors_0.28.1                         
## [13] Biobase_2.50.0                           
## [14] BiocGenerics_0.36.1                      
## [15] survival_3.2-11                          
## [16] knitr_1.32                               
## 
## loaded via a namespace (and not attached):
##  [1] MatrixGenerics_1.2.1        httr_1.4.2                 
##  [3] sass_0.3.1                  bit64_4.0.5                
##  [5] jsonlite_1.7.2              splines_4.0.5              
##  [7] bslib_0.2.4                 assertthat_0.2.1           
##  [9] askpass_1.1                 highr_0.9                  
## [11] BiocManager_1.30.12         BiocFileCache_1.14.0       
## [13] RBGL_1.66.0                 blob_1.2.1                 
## [15] GenomeInfoDbData_1.2.4      Rsamtools_2.6.0            
## [17] yaml_2.2.1                  progress_1.2.2             
## [19] pillar_1.6.0                RSQLite_2.2.6              
## [21] lattice_0.20-44             glue_1.4.2                 
## [23] digest_0.6.27               XVector_0.30.0             
## [25] htmltools_0.5.1.1           Matrix_1.3-2               
## [27] XML_3.99-0.6                pkgconfig_2.0.3            
## [29] biomaRt_2.46.3              zlibbioc_1.36.0            
## [31] purrr_0.3.4                 BiocParallel_1.24.1        
## [33] tibble_3.1.1                openssl_1.4.3              
## [35] generics_0.1.0              ellipsis_0.3.1             
## [37] cachem_1.0.4                SummarizedExperiment_1.20.0
## [39] magrittr_2.0.1              crayon_1.4.1               
## [41] memoise_2.0.0               evaluate_0.14              
## [43] fansi_0.4.2                 xml2_1.3.2                 
## [45] graph_1.68.0                data.table_1.14.0          
## [47] tools_4.0.5                 prettyunits_1.1.1          
## [49] hms_1.0.0                   lifecycle_1.0.0            
## [51] matrixStats_0.58.0          stringr_1.4.0              
## [53] DelayedArray_0.16.3         Biostrings_2.58.0          
## [55] compiler_4.0.5              jquerylib_0.1.3            
## [57] rlang_0.4.10                grid_4.0.5                 
## [59] RCurl_1.98-1.3              rappdirs_0.3.3             
## [61] bitops_1.0-6                rmarkdown_2.7              
## [63] DBI_1.1.1                   curl_4.3                   
## [65] R6_2.5.0                    GenomicAlignments_1.26.0   
## [67] dplyr_1.0.5                 rtracklayer_1.50.0         
## [69] fastmap_1.1.0               bit_4.0.4                  
## [71] utf8_1.2.1                  stringi_1.5.3              
## [73] Rcpp_1.0.6                  vctrs_0.3.7                
## [75] dbplyr_2.1.1                tidyselect_1.1.0           
## [77] xfun_0.22